MitoAge

Trachurus japonicus

Japanese jack mackerel

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Maximum lifespan
12 yr
FishBase record
mtDNA size
16,559 bp
RefSeq NC_002813.1
GC content
46.47%
Whole genome
Non-coding
929 bp
D-loop 862 bp

Where Japanese jack mackerel sits among 2,335 species

Whole-genome GC content against maximum lifespan. Japanese jack mackerel has the 1,429th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Japanese jack mackerel
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,559 bp
GC skew (G − C) / (G + C)
−0.286
AT skew (A − T) / (A + T)
+0.036

Life history

Maximum lifespan
12 years
Adult weight
363 g

Lifespan from FishBase · FishBase record · other traits from AnAge build 15 (HAGRID 04112)

About this record

Lifespan source
FishBase v26.06
Based on
an animal in the wild
Data quality
acceptable
Licence
CC BY-NC 4.0
Status
New in build 2
In the database since
build 2 (2026-11-13)

The lifespan value is for non-commercial use only; the genome data is not restricted by it.

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,559 bp
Protein-coding11,405 bp
12S rRNA955 bp
16S rRNA1,717 bp
All tRNA1,553 bp
D-loop862 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp23.9%26.4%16.5%33.2%49.74%−0.336−0.049
ND2NADH dehydrogenase subunit 21,045 bp26.7%25.6%12.0%35.8%47.75%−0.499+0.022
COX1Cytochrome c oxidase subunit I1,551 bp24.4%30.2%18.6%26.8%45.39%−0.179−0.105
COX2Cytochrome c oxidase subunit II691 bp29.2%26.8%15.6%28.4%43.99%−0.289+0.044
ATP8ATP synthase F0 subunit 8165 bp27.9%24.2%12.7%35.2%47.88%−0.468+0.070
ATP6ATP synthase F0 subunit 6684 bp25.6%29.4%12.6%32.5%45.03%−0.442−0.069
COX3Cytochrome c oxidase subunit III784 bp24.6%25.4%17.3%32.7%50.00%−0.306−0.015
ND3NADH dehydrogenase subunit 3349 bp23.8%29.2%14.3%32.7%46.99%−0.390−0.103
ND4LNADH dehydrogenase subunit 4L297 bp20.9%29.0%16.5%33.7%50.17%−0.342−0.162
ND4NADH dehydrogenase subunit 41,381 bp25.5%26.5%14.1%33.9%48.01%−0.412−0.020
ND5NADH dehydrogenase subunit 51,839 bp27.8%25.8%13.6%32.7%46.38%−0.411+0.037
ND6NADH dehydrogenase subunit 6522 bp37.9%16.5%14.4%31.2%45.59%−0.370+0.394
CYTBCytochrome b1,141 bp24.1%27.5%15.2%33.2%48.38%−0.373−0.066
12S rRNA12S ribosomal RNA955 bp30.6%21.7%22.1%25.7%47.75%−0.075+0.170
16S rRNA16S ribosomal RNA1,717 bp32.7%21.2%20.4%25.7%46.07%−0.115+0.214
D-loopControl region (D-loop)862 bp31.0%31.7%15.9%21.5%37.36%−0.149−0.011

Codon usage

Counts per codon, darker is more frequent

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%
UUU95
UUC148
Leu L17.0%
UUA69
UUG13
CUU171
CUC168
CUA181
CUG44
Ile I7.0%
AUU146
AUC119
Met M4.1%
AUA75
AUG80
Val V6.0%
GUU67
GUC82
GUA70
GUG11
Ser S6.1%
UCU51
UCC63
UCA57
UCG11
AGU8
AGC42
Pro P6.0%
CCU51
CCC107
CCA60
CCG9
Thr T7.9%
ACU48
ACC131
ACA107
ACG13
Ala A9.1%
GCU66
GCC148
GCA117
GCG14
Tyr Y3.0%
UAU28
UAC85
His H2.8%
CAU26
CAC81
Gln Q2.5%
CAA85
CAG12
Asn N3.2%
AAU29
AAC93
Lys K1.9%
AAA65
AAG9
Asp D2.1%
GAU20
GAC59
Glu E2.6%
GAA79
GAG19
Cys C0.7%
UGU4
UGC21
Trp W3.2%
UGA112
UGG8
Arg R2.0%
CGU8
CGC19
CGA41
CGG10
Gly G6.4%
GGU23
GGC91
GGA90
GGG40
Stop 0.2%
UAA6
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_002813.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,023955 bp+47.8%
tRNA-ValTransfer RNA1,0241,09572 bp+–
16S rRNARibosomal RNA1,0962,8121,717 bp+46.1%
tRNA-Leu (UUR)Transfer RNA2,8132,88674 bp+–
ND1Protein-coding gene2,8873,861975 bp+49.7%
tRNA-IleTransfer RNA3,8673,93670 bp+–
tRNA-GlnTransfer RNA3,9364,00671 bp−–
tRNA-MetTransfer RNA4,0064,07570 bp+–
ND2Protein-coding gene4,0765,1201,045 bp+47.8%
tRNA-TrpTransfer RNA5,1215,19171 bp+–
tRNA-AlaTransfer RNA5,1935,26169 bp−–
tRNA-AsnTransfer RNA5,2635,33573 bp−–
tRNA-CysTransfer RNA5,3745,44067 bp−–
tRNA-TyrTransfer RNA5,4415,51070 bp−–
COX1Protein-coding gene5,5127,0621,551 bp+45.4%
tRNA-Ser (UCN)Transfer RNA7,0637,13371 bp−–
tRNA-AspTransfer RNA7,1377,20771 bp+–
COX2Protein-coding gene7,2157,905691 bp+44.0%
tRNA-LysTransfer RNA7,9067,98075 bp+–
ATP8Protein-coding gene7,9828,146165 bp+47.9%
ATP6Protein-coding gene8,1408,823684 bp+45.0%
COX3Protein-coding gene8,8239,606784 bp+50.0%
tRNA-GlyTransfer RNA9,6089,67770 bp+–
ND3Protein-coding gene9,67810,026349 bp+47.0%
tRNA-ArgTransfer RNA10,02710,09569 bp+–
ND4LProtein-coding gene10,09710,393297 bp+50.2%
ND4Protein-coding gene10,38711,7671,381 bp+48.0%
tRNA-HisTransfer RNA11,76811,83972 bp+–
tRNA-Ser (AGY)Transfer RNA11,84011,90768 bp+–
tRNA-Leu (CUN)Transfer RNA11,91211,98473 bp+–
ND5Protein-coding gene11,98513,8231,839 bp+46.4%
ND6Protein-coding gene13,82014,341522 bp−45.6%
tRNA-GluTransfer RNA14,34214,41069 bp−–
CYTBProtein-coding gene14,41515,5551,141 bp+48.4%
tRNA-ThrTransfer RNA15,55615,62772 bp+–
tRNA-ProTransfer RNA15,62715,69771 bp−–
D-loopControl region15,69816,559862 bp–37.4%

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