Trachypenaeus curvirostris
Southern rough shrimp
GC content
31.33%
Whole genome
Non-coding
1,118 bp
D-loop 1,011 bp
Where Southern rough shrimp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Southern rough shrimp has the 2,295th longest lifespan of them.
- This species
- All other species
Base composition
Whole genome15,968 bp
- GC skew (G − C) / (G + C)
- −0.264
- AT skew (A − T) / (A + T)
- +0.024
About this record
- Lifespan source
- SeaLifeBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome15,968 bp
Protein-coding11,137 bp
12S rRNA861 bp
16S rRNA1,377 bp
All tRNA1,480 bp
D-loop1,011 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 939 bp | 32.16% | −0.364 | +0.312 | |||||
| ND2NADH dehydrogenase subunit 2 | 999 bp | 31.93% | −0.373 | −0.194 | |||||
| COX1Cytochrome c oxidase subunit I | 1,534 bp | 36.12% | −0.079 | −0.108 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 33.29% | −0.162 | −0.041 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 25.16% | −0.550 | +0.042 | |||||
| ATP6ATP synthase F0 subunit 6 | 675 bp | 34.52% | −0.296 | −0.109 | |||||
| COX3Cytochrome c oxidase subunit III | 790 bp | 36.33% | −0.192 | −0.117 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 31.82% | −0.232 | −0.133 | |||||
| ND4LNADH dehydrogenase subunit 4L | 300 bp | 28.00% | −0.429 | +0.278 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,341 bp | 31.25% | −0.365 | +0.278 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,722 bp | 31.48% | −0.351 | +0.231 | |||||
| ND6NADH dehydrogenase subunit 6 | 516 bp | 29.07% | −0.493 | −0.186 | |||||
| CYTBCytochrome b | 1,137 bp | 37.91% | −0.234 | −0.119 | |||||
| 12S rRNA12S ribosomal RNA | 861 bp | 28.69% | −0.279 | +0.026 | |||||
| 16S rRNA16S ribosomal RNA | 1,377 bp | 26.36% | −0.361 | +0.010 | |||||
| D-loopControl region (D-loop) | 1,011 bp | 16.52% | −0.006 | −0.045 |
Codon usage
Counts per codon, darker is more frequent3,716 codons in all protein-coding genes. Grouped with the Invertebrate mitochondrial code (NCBI table 5).
Phe F8.2%
UUU231
UUC72
Leu L16.3%
UUA306
UUG81
CUU121
CUC33
CUA59
CUG7
Ile I7.8%
AUU223
AUC68
Met M5.1%
AUA148
AUG42
Val V6.8%
GUU108
GUC28
GUA84
GUG34
Ser S9.4%
UCU124
UCC18
UCA65
UCG14
AGU32
AGC15
AGA81
AGG1
Pro P3.9%
CCU81
CCC16
CCA37
CCG11
Thr T5.7%
ACU85
ACC25
ACA89
ACG11
Ala A6.5%
GCU140
GCC40
GCA52
GCG8
Tyr Y3.6%
UAU99
UAC36
His H2.3%
CAU48
CAC36
Gln Q2.0%
CAA64
CAG12
Asn N3.5%
AAU87
AAC42
Lys K2.3%
AAA72
AAG15
Asp D2.1%
GAU49
GAC29
Glu E2.1%
GAA62
GAG16
Cys C1.1%
UGU36
UGC5
Trp W2.7%
UGA81
UGG19
Arg R1.6%
CGU12
CGC4
CGA38
CGG6
Gly G6.7%
GGU69
GGC12
GGA102
GGG66
Stop 0.2%
UAA8
UAG1
Genome map
38 annotated features in NC_050695.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (31.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Ile | Transfer RNA | 1 | 66 | 66 bp | + | – |
| tRNA-Gln | Transfer RNA | 74 | 142 | 69 bp | − | – |
| tRNA-Met | Transfer RNA | 164 | 231 | 68 bp | + | – |
| ND2 | Protein-coding gene | 232 | 1,230 | 999 bp | + | 31.9% |
| tRNA-Trp | Transfer RNA | 1,229 | 1,297 | 69 bp | + | – |
| tRNA-Cys | Transfer RNA | 1,302 | 1,365 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 1,374 | 1,439 | 66 bp | − | – |
| COX1 | Protein-coding gene | 1,440 | 2,973 | 1,534 bp | + | 36.1% |
| tRNA-Leu | Transfer RNA | 2,974 | 3,039 | 66 bp | + | – |
| COX2 | Protein-coding gene | 3,044 | 3,731 | 688 bp | + | 33.3% |
| tRNA-Lys | Transfer RNA | 3,732 | 3,801 | 70 bp | + | – |
| tRNA-Asp | Transfer RNA | 3,804 | 3,870 | 67 bp | + | – |
| ATP8 | Protein-coding gene | 3,871 | 4,029 | 159 bp | + | 25.2% |
| ATP6 | Protein-coding gene | 4,023 | 4,697 | 675 bp | + | 34.5% |
| COX3 | Protein-coding gene | 4,702 | 5,491 | 790 bp | + | 36.3% |
| tRNA-Gly | Transfer RNA | 5,492 | 5,557 | 66 bp | + | – |
| ND3 | Protein-coding gene | 5,558 | 5,909 | 352 bp | + | 31.8% |
| tRNA-Ala | Transfer RNA | 5,910 | 5,974 | 65 bp | + | – |
| tRNA-Arg | Transfer RNA | 5,976 | 6,040 | 65 bp | + | – |
| tRNA-Asn | Transfer RNA | 6,041 | 6,106 | 66 bp | + | – |
| tRNA-Ser | Transfer RNA | 6,107 | 6,173 | 67 bp | + | – |
| tRNA-Glu | Transfer RNA | 6,174 | 6,242 | 69 bp | + | – |
| tRNA-Phe | Transfer RNA | 6,261 | 6,327 | 67 bp | − | – |
| ND5 | Protein-coding gene | 6,327 | 8,048 | 1,722 bp | − | 31.5% |
| tRNA-His | Transfer RNA | 8,061 | 8,127 | 67 bp | − | – |
| ND4 | Protein-coding gene | 8,128 | 9,468 | 1,341 bp | − | 31.3% |
| ND4L | Protein-coding gene | 9,462 | 9,761 | 300 bp | − | 28.0% |
| tRNA-Thr | Transfer RNA | 9,764 | 9,830 | 67 bp | + | – |
| tRNA-Pro | Transfer RNA | 9,831 | 9,896 | 66 bp | − | – |
| ND6 | Protein-coding gene | 9,898 | 10,413 | 516 bp | + | 29.1% |
| CYTB | Protein-coding gene | 10,413 | 11,549 | 1,137 bp | + | 37.9% |
| tRNA-Ser | Transfer RNA | 11,548 | 11,617 | 70 bp | + | – |
| ND1 | Protein-coding gene | 11,635 | 12,573 | 939 bp | − | 32.2% |
| tRNA-Leu | Transfer RNA | 12,578 | 12,645 | 68 bp | − | – |
| 16S rRNA | Ribosomal RNA | 12,647 | 14,023 | 1,377 bp | + | 26.4% |
| tRNA-Val | Transfer RNA | 14,024 | 14,095 | 72 bp | − | – |
| 12S rRNA | Ribosomal RNA | 14,097 | 14,957 | 861 bp | + | 28.7% |
| D-loop | Control region | 14,958 | 15,968 | 1,011 bp | – | 16.5% |