MitoAge

Trachypithecus cristatus

Silvered leaf monkey

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Maximum lifespan
28.3 yr
AnAge record
mtDNA size
16,557 bp
RefSeq NC_023971.1
GC content
39.01%
Whole genome
Non-coding
1,208 bp
D-loop 1,092 bp

Where Silvered leaf monkey sits among 2,335 species

Whole-genome GC content against maximum lifespan. Silvered leaf monkey has the 510th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Silvered leaf monkey
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,557 bp
GC skew (G − C) / (G + C)
−0.348
AT skew (A − T) / (A + T)
+0.057

Life history

Maximum lifespan
28.3 years
Adult weight
6.2 kg
Female sexual maturity
4 years
Gestation or incubation
150 days
Litter or clutch size
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02767)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,557 bp
Protein-coding11,337 bp
12S rRNA948 bp
16S rRNA1,565 bp
All tRNA1,502 bp
D-loop1,092 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp29.7%29.5%11.4%29.3%40.73%−0.440+0.004
ND2NADH dehydrogenase subunit 21,042 bp34.6%30.7%7.9%26.8%34.65%−0.546+0.060
COX1Cytochrome c oxidase subunit I1,545 bp27.5%31.7%16.1%24.7%40.84%−0.211−0.070
COX2Cytochrome c oxidase subunit II684 bp31.6%29.7%13.6%25.1%38.74%−0.298+0.031
ATP8ATP synthase F0 subunit 8207 bp39.6%30.4%4.8%25.1%29.95%−0.677+0.131
ATP6ATP synthase F0 subunit 6681 bp29.8%30.5%11.5%28.2%39.65%−0.422−0.012
COX3Cytochrome c oxidase subunit III784 bp28.1%31.6%13.5%26.8%40.31%−0.329−0.060
ND3NADH dehydrogenase subunit 3346 bp32.1%30.3%10.4%27.2%37.57%−0.446+0.028
ND4LNADH dehydrogenase subunit 4L297 bp29.6%31.0%11.4%27.9%39.39%−0.419−0.022
ND4NADH dehydrogenase subunit 41,378 bp31.0%31.1%10.2%27.7%37.95%−0.461−0.001
ND5NADH dehydrogenase subunit 51,806 bp32.2%30.6%10.0%27.2%37.15%−0.463+0.026
ND6NADH dehydrogenase subunit 6525 bp41.3%21.0%7.6%30.1%37.71%−0.596+0.327
CYTBCytochrome b1,141 bp29.6%28.0%11.1%31.2%42.33%−0.474+0.027
12S rRNA12S ribosomal RNA948 bp35.1%23.5%17.7%23.6%41.35%−0.143+0.198
16S rRNA16S ribosomal RNA1,565 bp35.9%23.6%17.8%22.6%40.45%−0.118+0.206
D-loopControl region (D-loop)1,092 bp30.6%27.5%13.0%28.9%41.94%−0.380+0.054

Codon usage

Counts per codon, darker is more frequent

3,795 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU129
UUC97
Leu L16.6%
UUA141
UUG18
CUU95
CUC98
CUA248
CUG29
Ile I9.1%
AUU227
AUC117
Met M6.2%
AUA190
AUG46
Val V4.1%
GUU45
GUC30
GUA66
GUG13
Ser S7.1%
UCU53
UCC67
UCA86
UCG6
AGU21
AGC36
Pro P5.5%
CCU54
CCC79
CCA71
CCG4
Thr T9.1%
ACU78
ACC124
ACA137
ACG7
Ala A6.2%
GCU49
GCC100
GCA82
GCG6
Tyr Y3.5%
UAU88
UAC45
His H2.8%
CAU37
CAC69
Gln Q2.5%
CAA85
CAG8
Asn N4.6%
AAU98
AAC75
Lys K2.4%
AAA84
AAG6
Asp D1.7%
GAU28
GAC38
Glu E2.2%
GAA67
GAG18
Cys C0.6%
UGU8
UGC16
Trp W2.7%
UGA90
UGG12
Arg R1.6%
CGU12
CGC18
CGA31
CGG1
Gly G5.4%
GGU49
GGC62
GGA64
GGG30
Stop 0.2%
UAA5
UAG1
AGA1
AGG0

Genome map

38 annotated features in NC_023971.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17171 bp+–
12S rRNARibosomal RNA721,019948 bp+41.4%
tRNA-ValTransfer RNA1,0201,08869 bp+–
16S rRNARibosomal RNA1,0892,6531,565 bp+40.5%
tRNA-Leu (UUR)Transfer RNA2,6542,72875 bp+–
ND1Protein-coding gene2,7313,685955 bp+40.7%
tRNA-IleTransfer RNA3,6863,75570 bp+–
tRNA-GlnTransfer RNA3,7533,82472 bp−–
tRNA-MetTransfer RNA3,8263,89368 bp+–
ND2Protein-coding gene3,8944,9351,042 bp+34.7%
tRNA-TrpTransfer RNA4,9365,00469 bp+–
tRNA-AlaTransfer RNA5,0135,08169 bp−–
tRNA-AsnTransfer RNA5,0835,15573 bp−–
tRNA-CysTransfer RNA5,1885,25366 bp−–
tRNA-TyrTransfer RNA5,2535,31866 bp−–
COX1Protein-coding gene5,3296,8731,545 bp+40.8%
tRNA-Ser (UCN)Transfer RNA6,8716,93969 bp−–
tRNA-AspTransfer RNA6,9437,01068 bp+–
COX2Protein-coding gene7,0127,695684 bp+38.7%
tRNA-LysTransfer RNA7,7437,80967 bp+–
ATP8Protein-coding gene7,8118,017207 bp+30.0%
ATP6Protein-coding gene7,9728,652681 bp+39.7%
COX3Protein-coding gene8,6529,435784 bp+40.3%
tRNA-GlyTransfer RNA9,4369,50368 bp+–
ND3Protein-coding gene9,5049,849346 bp+37.6%
tRNA-ArgTransfer RNA9,8509,91465 bp+–
ND4LProtein-coding gene9,91510,211297 bp+39.4%
ND4Protein-coding gene10,20511,5821,378 bp+38.0%
tRNA-HisTransfer RNA11,58311,65169 bp+–
tRNA-Ser (AGY)Transfer RNA11,65211,71059 bp+–
tRNA-Leu (CUN)Transfer RNA11,71111,78171 bp+–
ND5Protein-coding gene11,78613,5911,806 bp+37.2%
ND6Protein-coding gene13,59214,116525 bp−37.7%
tRNA-GluTransfer RNA14,11714,18569 bp−–
CYTBProtein-coding gene14,19015,3301,141 bp+42.3%
tRNA-ThrTransfer RNA15,33115,39565 bp+–
tRNA-ProTransfer RNA15,39815,46568 bp−–
D-loopControl region15,46616,5571,092 bp–41.9%

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