MitoAge

Trachypithecus johnii

Hooded leaf monkey

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Maximum lifespan
34 yr
AnAge record
mtDNA size
16,544 bp
RefSeq NC_019583.1
GC content
38.87%
Whole genome
Non-coding
1,228 bp
D-loop 1,087 bp

Where Hooded leaf monkey sits among 2,335 species

Whole-genome GC content against maximum lifespan. Hooded leaf monkey has the 348th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Hooded leaf monkey
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,544 bp
GC skew (G − C) / (G + C)
−0.333
AT skew (A − T) / (A + T)
+0.046

Life history

Maximum lifespan
34 years
Adult weight
12 kg
Litter or clutch size
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02763)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, tiny sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,544 bp
Protein-coding11,328 bp
12S rRNA947 bp
16S rRNA1,542 bp
All tRNA1,502 bp
D-loop1,087 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp29.7%31.4%11.3%27.5%38.85%−0.418−0.027
ND2NADH dehydrogenase subunit 21,042 bp34.9%29.9%7.9%27.3%35.13%−0.552+0.077
COX1Cytochrome c oxidase subunit I1,545 bp27.1%32.8%15.8%24.4%40.19%−0.214−0.095
COX2Cytochrome c oxidase subunit II684 bp30.6%28.7%14.8%26.0%40.79%−0.276+0.032
ATP8ATP synthase F0 subunit 8207 bp36.2%33.3%5.8%24.6%30.44%−0.619+0.042
ATP6ATP synthase F0 subunit 6681 bp30.5%28.9%11.3%29.2%40.53%−0.442+0.027
COX3Cytochrome c oxidase subunit III784 bp27.9%31.9%13.6%26.5%40.18%−0.321−0.066
ND3NADH dehydrogenase subunit 3346 bp30.6%30.6%11.8%26.9%38.73%−0.3880.000
ND4LNADH dehydrogenase subunit 4L297 bp29.3%33.0%11.8%25.9%37.71%−0.375−0.059
ND4NADH dehydrogenase subunit 41,378 bp31.4%30.8%10.2%27.6%37.74%−0.462+0.009
ND5NADH dehydrogenase subunit 51,806 bp32.2%31.1%10.2%26.5%36.71%−0.442+0.018
ND6NADH dehydrogenase subunit 6522 bp41.6%24.3%7.1%27.0%34.10%−0.584+0.262
CYTBCytochrome b1,135 bp29.1%29.8%12.3%28.8%41.15%−0.400−0.012
12S rRNA12S ribosomal RNA947 bp34.6%23.9%18.3%23.2%41.50%−0.120+0.184
16S rRNA16S ribosomal RNA1,542 bp35.8%24.0%17.7%22.5%40.21%−0.119+0.197
D-loopControl region (D-loop)1,087 bp29.8%28.8%13.0%28.4%41.40%−0.373+0.017

Codon usage

Counts per codon, darker is more frequent

3,792 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU126
UUC101
Leu L16.3%
UUA131
UUG20
CUU104
CUC94
CUA232
CUG38
Ile I9.0%
AUU221
AUC122
Met M6.7%
AUA219
AUG36
Val V3.9%
GUU50
GUC30
GUA56
GUG12
Ser S7.1%
UCU63
UCC55
UCA96
UCG2
AGU17
AGC38
Pro P5.5%
CCU53
CCC85
CCA69
CCG3
Thr T8.7%
ACU86
ACC93
ACA141
ACG10
Ala A6.4%
GCU58
GCC97
GCA81
GCG7
Tyr Y3.7%
UAU103
UAC38
His H2.5%
CAU34
CAC61
Gln Q2.5%
CAA85
CAG10
Asn N4.6%
AAU91
AAC82
Lys K2.4%
AAA83
AAG9
Asp D1.7%
GAU39
GAC26
Glu E2.2%
GAA67
GAG18
Cys C0.6%
UGU8
UGC15
Trp W2.7%
UGA83
UGG18
Arg R1.7%
CGU13
CGC19
CGA29
CGG2
Gly G5.4%
GGU46
GGC66
GGA65
GGG29
Stop 0.2%
UAA4
UAG2
AGA0
AGG1

Genome map

38 annotated features in NC_019583.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17171 bp+–
12S rRNARibosomal RNA721,018947 bp+41.5%
tRNA-ValTransfer RNA1,0191,08769 bp+–
16S rRNARibosomal RNA1,0882,6291,542 bp+40.2%
tRNA-Leu (UUR)Transfer RNA2,6492,72375 bp+–
ND1Protein-coding gene2,7263,680955 bp+38.9%
tRNA-IleTransfer RNA3,6813,75070 bp+–
tRNA-GlnTransfer RNA3,7483,81972 bp−–
tRNA-MetTransfer RNA3,8213,88767 bp+–
ND2Protein-coding gene3,8884,9291,042 bp+35.1%
tRNA-TrpTransfer RNA4,9304,99768 bp+–
tRNA-AlaTransfer RNA5,0065,07469 bp−–
tRNA-AsnTransfer RNA5,0765,14873 bp−–
tRNA-CysTransfer RNA5,1815,24868 bp−–
tRNA-TyrTransfer RNA5,2485,31366 bp−–
COX1Protein-coding gene5,3246,8681,545 bp+40.2%
tRNA-Ser (UCN)Transfer RNA6,8666,93469 bp−–
tRNA-AspTransfer RNA6,9387,00568 bp+–
COX2Protein-coding gene7,0077,690684 bp+40.8%
tRNA-LysTransfer RNA7,7377,80367 bp+–
ATP8Protein-coding gene7,8058,011207 bp+30.4%
ATP6Protein-coding gene7,9668,646681 bp+40.5%
COX3Protein-coding gene8,6469,429784 bp+40.2%
tRNA-GlyTransfer RNA9,4309,49768 bp+–
ND3Protein-coding gene9,4989,843346 bp+38.7%
tRNA-ArgTransfer RNA9,8449,90865 bp+–
ND4LProtein-coding gene9,90910,205297 bp+37.7%
ND4Protein-coding gene10,19911,5761,378 bp+37.7%
tRNA-HisTransfer RNA11,57711,64569 bp+–
tRNA-Ser (AGY)Transfer RNA11,64611,70459 bp+–
tRNA-Leu (CUN)Transfer RNA11,70511,77571 bp+–
ND5Protein-coding gene11,78113,5861,806 bp+36.7%
ND6Protein-coding gene13,58714,108522 bp−34.1%
tRNA-GluTransfer RNA14,10914,17769 bp−–
CYTBProtein-coding gene14,18215,3161,135 bp+41.2%
tRNA-ThrTransfer RNA15,32315,38866 bp+–
tRNA-ProTransfer RNA15,39115,45767 bp−–
D-loopControl region15,45816,5441,087 bp–41.4%

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