MitoAge

Trachypithecus obscurus

Dusky leaf monkey

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Maximum lifespan
33.9 yr
AnAge record
mtDNA size
16,560 bp
RefSeq NC_006900.1
GC content
38.71%
Whole genome
Non-coding
1,214 bp
D-loop 1,093 bp

Where Dusky leaf monkey sits among 2,335 species

Whole-genome GC content against maximum lifespan. Dusky leaf monkey has the 354th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Dusky leaf monkey
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,560 bp
GC skew (G − C) / (G + C)
−0.336
AT skew (A − T) / (A + T)
+0.044

Life history

Maximum lifespan
33.9 years
Adult weight
7.1 kg
Birth weight
300 g
Female sexual maturity
4 years
Gestation or incubation
145 days
Litter or clutch size
1
Litters per year
0.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02770)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,560 bp
Protein-coding11,341 bp
12S rRNA948 bp
16S rRNA1,564 bp
All tRNA1,501 bp
D-loop1,093 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp29.0%30.1%12.0%28.8%40.86%−0.412−0.018
ND2NADH dehydrogenase subunit 21,044 bp34.3%29.1%8.0%28.5%36.59%−0.560+0.082
COX1Cytochrome c oxidase subunit I1,545 bp27.8%32.1%15.9%24.2%40.13%−0.206−0.072
COX2Cytochrome c oxidase subunit II684 bp31.6%30.7%13.6%24.1%37.72%−0.279+0.014
ATP8ATP synthase F0 subunit 8207 bp40.1%28.5%4.8%26.6%31.40%−0.692+0.169
ATP6ATP synthase F0 subunit 6681 bp30.2%31.6%11.3%26.9%38.18%−0.408−0.021
COX3Cytochrome c oxidase subunit III784 bp28.2%31.6%13.6%26.5%40.18%−0.321−0.058
ND3NADH dehydrogenase subunit 3346 bp31.8%32.7%10.4%25.1%35.55%−0.415−0.013
ND4LNADH dehydrogenase subunit 4L297 bp28.6%36.7%11.8%22.9%34.68%−0.320−0.124
ND4NADH dehydrogenase subunit 41,378 bp31.2%31.8%9.9%27.1%37.01%−0.463−0.009
ND5NADH dehydrogenase subunit 51,806 bp32.1%30.5%10.4%27.1%37.49%−0.445+0.026
ND6NADH dehydrogenase subunit 6525 bp41.5%22.3%7.4%28.8%36.19%−0.589+0.301
CYTBCytochrome b1,141 bp29.1%29.9%11.3%29.7%41.02%−0.449−0.013
12S rRNA12S ribosomal RNA948 bp34.1%24.1%18.4%23.5%41.88%−0.123+0.172
16S rRNA16S ribosomal RNA1,564 bp35.9%23.7%17.7%22.7%40.41%−0.123+0.204
D-loopControl region (D-loop)1,093 bp29.7%29.0%13.4%27.9%41.26%−0.353+0.012

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU138
UUC88
Leu L16.6%
UUA155
UUG19
CUU97
CUC104
CUA228
CUG26
Ile I8.8%
AUU231
AUC103
Met M6.1%
AUA195
AUG38
Val V4.2%
GUU44
GUC31
GUA70
GUG14
Ser S7.1%
UCU52
UCC71
UCA88
UCG5
AGU26
AGC28
Pro P5.4%
CCU56
CCC77
CCA67
CCG6
Thr T9.2%
ACU87
ACC112
ACA144
ACG7
Ala A6.4%
GCU50
GCC100
GCA88
GCG4
Tyr Y3.5%
UAU81
UAC53
His H2.8%
CAU40
CAC65
Gln Q2.4%
CAA81
CAG12
Asn N4.7%
AAU106
AAC71
Lys K2.3%
AAA80
AAG9
Asp D1.6%
GAU36
GAC26
Glu E2.3%
GAA64
GAG22
Cys C0.6%
UGU7
UGC15
Trp W2.7%
UGA89
UGG13
Arg R1.7%
CGU12
CGC18
CGA31
CGG2
Gly G5.4%
GGU59
GGC56
GGA68
GGG23
Stop 0.2%
UAA4
UAG4
AGA0
AGG1

Genome map

38 annotated features in NC_006900.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17171 bp+–
12S rRNARibosomal RNA721,019948 bp+41.9%
tRNA-ValTransfer RNA1,0201,08869 bp+–
16S rRNARibosomal RNA1,0892,6521,564 bp+40.4%
tRNA-Leu (UUR)Transfer RNA2,6532,72775 bp+–
ND1Protein-coding gene2,7303,686957 bp+40.9%
tRNA-IleTransfer RNA3,6853,75470 bp+–
tRNA-GlnTransfer RNA3,7523,82372 bp−–
tRNA-MetTransfer RNA3,8253,89268 bp+–
ND2Protein-coding gene3,8934,9361,044 bp+36.6%
tRNA-TrpTransfer RNA4,9355,00268 bp+–
tRNA-AlaTransfer RNA5,0115,07969 bp−–
tRNA-AsnTransfer RNA5,0815,15373 bp−–
tRNA-CysTransfer RNA5,1865,25166 bp−–
tRNA-TyrTransfer RNA5,2535,31765 bp−–
COX1Protein-coding gene5,3326,8761,545 bp+40.1%
tRNA-Ser (UCN)Transfer RNA6,8746,94269 bp−–
tRNA-AspTransfer RNA6,9467,01368 bp+–
COX2Protein-coding gene7,0157,698684 bp+37.7%
tRNA-LysTransfer RNA7,7467,81166 bp+–
ATP8Protein-coding gene7,8138,019207 bp+31.4%
ATP6Protein-coding gene7,9748,654681 bp+38.2%
COX3Protein-coding gene8,6549,437784 bp+40.2%
tRNA-GlyTransfer RNA9,4389,50568 bp+–
ND3Protein-coding gene9,5069,851346 bp+35.6%
tRNA-ArgTransfer RNA9,8529,91665 bp+–
ND4LProtein-coding gene9,91710,213297 bp+34.7%
ND4Protein-coding gene10,20711,5841,378 bp+37.0%
tRNA-HisTransfer RNA11,58511,65369 bp+–
tRNA-Ser (AGY)Transfer RNA11,65411,71259 bp+–
tRNA-Leu (CUN)Transfer RNA11,71311,78371 bp+–
ND5Protein-coding gene11,78813,5931,806 bp+37.5%
ND6Protein-coding gene13,59414,118525 bp−36.2%
tRNA-GluTransfer RNA14,11814,18770 bp−–
CYTBProtein-coding gene14,19215,3321,141 bp+41.0%
tRNA-ThrTransfer RNA15,33315,39866 bp+–
tRNA-ProTransfer RNA15,40115,46767 bp−–
D-loopControl region15,46816,5601,093 bp–41.3%

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