MitoAge

Trachypithecus pileatus

Capped leaf monkey

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Maximum lifespan
25.2 yr
AnAge record
mtDNA size
16,526 bp
RefSeq NC_024529.1
GC content
39.00%
Whole genome
Non-coding
1,187 bp
D-loop 1,064 bp

Where Capped leaf monkey sits among 2,335 species

Whole-genome GC content against maximum lifespan. Capped leaf monkey has the 619th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Capped leaf monkey
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,526 bp
GC skew (G − C) / (G + C)
−0.346
AT skew (A − T) / (A + T)
+0.058

Life history

Maximum lifespan
25.2 years
Adult weight
11.5 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02772)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,526 bp
Protein-coding11,331 bp
12S rRNA947 bp
16S rRNA1,564 bp
All tRNA1,500 bp
D-loop1,064 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp29.3%29.0%11.7%29.9%41.68%−0.437+0.005
ND2NADH dehydrogenase subunit 21,042 bp34.4%29.6%8.0%28.1%36.08%−0.559+0.075
COX1Cytochrome c oxidase subunit I1,545 bp27.6%32.2%15.7%24.5%40.19%−0.217−0.078
COX2Cytochrome c oxidase subunit II684 bp31.4%29.1%13.6%25.9%39.47%−0.311+0.039
ATP8ATP synthase F0 subunit 8207 bp38.6%27.5%6.3%27.5%33.82%−0.629+0.168
ATP6ATP synthase F0 subunit 6681 bp31.6%30.2%10.4%27.8%38.18%−0.454+0.021
COX3Cytochrome c oxidase subunit III784 bp28.1%31.0%13.5%27.4%40.94%−0.340−0.050
ND3NADH dehydrogenase subunit 3346 bp32.9%30.9%10.1%26.0%36.13%−0.440+0.032
ND4LNADH dehydrogenase subunit 4L297 bp30.3%33.0%10.4%26.3%36.70%−0.431−0.043
ND4NADH dehydrogenase subunit 41,378 bp31.6%32.1%10.1%26.2%36.28%−0.444−0.007
ND5NADH dehydrogenase subunit 51,806 bp31.8%30.2%10.5%27.5%38.04%−0.447+0.026
ND6NADH dehydrogenase subunit 6525 bp42.1%20.0%7.4%30.5%37.91%−0.608+0.356
CYTBCytochrome b1,135 bp29.5%28.8%10.9%30.7%41.67%−0.476+0.012
12S rRNA12S ribosomal RNA947 bp34.7%23.5%18.2%23.5%41.71%−0.129+0.192
16S rRNA16S ribosomal RNA1,564 bp36.3%23.8%17.5%22.4%39.96%−0.123+0.208
D-loopControl region (D-loop)1,064 bp30.8%27.7%13.3%28.0%41.39%−0.355+0.053

Codon usage

Counts per codon, darker is more frequent

3,793 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU133
UUC93
Leu L16.7%
UUA145
UUG19
CUU99
CUC95
CUA245
CUG31
Ile I8.9%
AUU217
AUC121
Met M6.1%
AUA191
AUG40
Val V4.2%
GUU47
GUC28
GUA72
GUG13
Ser S7.0%
UCU55
UCC64
UCA89
UCG3
AGU17
AGC39
Pro P5.5%
CCU50
CCC83
CCA70
CCG6
Thr T9.2%
ACU85
ACC111
ACA148
ACG6
Ala A6.2%
GCU50
GCC94
GCA84
GCG8
Tyr Y3.6%
UAU85
UAC51
His H2.7%
CAU38
CAC64
Gln Q2.4%
CAA80
CAG12
Asn N4.6%
AAU93
AAC81
Lys K2.4%
AAA80
AAG10
Asp D1.7%
GAU29
GAC35
Glu E2.2%
GAA61
GAG24
Cys C0.6%
UGU3
UGC20
Trp W2.7%
UGA92
UGG9
Arg R1.7%
CGU11
CGC20
CGA33
CGG0
Gly G5.4%
GGU54
GGC67
GGA62
GGG21
Stop 0.2%
UAA6
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_024529.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17171 bp+–
12S rRNARibosomal RNA721,018947 bp+41.7%
tRNA-ValTransfer RNA1,0191,08769 bp+–
16S rRNARibosomal RNA1,0882,6511,564 bp+40.0%
tRNA-Leu (UUR)Transfer RNA2,6522,72675 bp+–
ND1Protein-coding gene2,7293,683955 bp+41.7%
tRNA-IleTransfer RNA3,6843,75370 bp+–
tRNA-GlnTransfer RNA3,7513,82272 bp−–
tRNA-MetTransfer RNA3,8243,89168 bp+–
ND2Protein-coding gene3,8924,9331,042 bp+36.1%
tRNA-TrpTransfer RNA4,9345,00168 bp+–
tRNA-AlaTransfer RNA5,0105,07869 bp−–
tRNA-AsnTransfer RNA5,0805,15273 bp−–
tRNA-CysTransfer RNA5,1845,24966 bp−–
tRNA-TyrTransfer RNA5,2495,31466 bp−–
COX1Protein-coding gene5,3276,8711,545 bp+40.2%
tRNA-Ser (UCN)Transfer RNA6,8696,93769 bp−–
tRNA-AspTransfer RNA6,9417,00868 bp+–
COX2Protein-coding gene7,0107,693684 bp+39.5%
tRNA-LysTransfer RNA7,7417,80767 bp+–
ATP8Protein-coding gene7,8098,015207 bp+33.8%
ATP6Protein-coding gene7,9708,650681 bp+38.2%
COX3Protein-coding gene8,6509,433784 bp+40.9%
tRNA-GlyTransfer RNA9,4349,50168 bp+–
ND3Protein-coding gene9,5029,847346 bp+36.1%
tRNA-ArgTransfer RNA9,8489,91265 bp+–
ND4LProtein-coding gene9,91310,209297 bp+36.7%
ND4Protein-coding gene10,20311,5801,378 bp+36.3%
tRNA-HisTransfer RNA11,58111,64969 bp+–
tRNA-Ser (AGY)Transfer RNA11,65011,70859 bp+–
tRNA-Leu (CUN)Transfer RNA11,70911,77971 bp+–
ND5Protein-coding gene11,78413,5891,806 bp+38.0%
ND6Protein-coding gene13,59014,114525 bp−37.9%
tRNA-GluTransfer RNA14,11514,18369 bp+–
CYTBProtein-coding gene14,18815,3221,135 bp+41.7%
tRNA-ThrTransfer RNA15,32915,39365 bp+–
tRNA-ProTransfer RNA15,39615,46267 bp−–
D-loopControl region15,46316,5261,064 bp–41.4%

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