Trematomus eulepidotus
Blunt scalyhead
GC content
44.94%
Whole genome
Non-coding
2,638 bp
D-loop 1,451 bp
Where Blunt scalyhead sits among 2,335 species
Whole-genome GC content against maximum lifespan. Blunt scalyhead has the 1,041st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome18,234 bp
- GC skew (G − C) / (G + C)
- −0.036
- AT skew (A − T) / (A + T)
- −0.126
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome18,234 bp
Protein-coding11,413 bp
12S rRNA949 bp
16S rRNA1,691 bp
All tRNA1,547 bp
D-loop1,451 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.67% | +0.240 | +0.138 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 48.90% | −0.164 | −0.237 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.46% | −0.045 | −0.220 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.85% | −0.076 | −0.155 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.07% | −0.101 | −0.051 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.86% | −0.147 | −0.167 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 45.29% | −0.107 | −0.144 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 47.86% | −0.167 | −0.333 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.13% | −0.153 | −0.238 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.76% | −0.089 | −0.202 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.95% | −0.129 | −0.141 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 53.76% | −0.197 | +0.183 | |||||
| CYTBCytochrome b | 1,141 bp | 47.50% | −0.140 | −0.215 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 47.00% | +0.009 | −0.133 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 44.59% | +0.066 | −0.170 | |||||
| D-loopControl region (D-loop) | 1,451 bp | 37.63% | +0.139 | −0.143 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU143
UUC93
Leu L16.6%
UUA106
UUG64
CUU192
CUC88
CUA108
CUG75
Ile I6.6%
AUU197
AUC55
Met M4.1%
AUA74
AUG81
Val V7.2%
GUU87
GUC53
GUA81
GUG54
Ser S6.1%
UCU64
UCC50
UCA40
UCG20
AGU26
AGC34
Pro P5.8%
CCU67
CCC94
CCA31
CCG30
Thr T6.6%
ACU64
ACC76
ACA84
ACG28
Ala A9.8%
GCU102
GCC115
GCA118
GCG37
Tyr Y2.8%
UAU60
UAC47
His H2.7%
CAU58
CAC44
Gln Q2.7%
CAA60
CAG41
Asn N2.8%
AAU51
AAC54
Lys K2.1%
AAA47
AAG33
Asp D2.1%
GAU35
GAC46
Glu E2.4%
GAA41
GAG49
Cys C1.0%
UGU27
UGC12
Trp W3.1%
UGA65
UGG52
Arg R2.0%
CGU19
CGC11
CGA33
CGG13
Gly G7.1%
GGU54
GGC65
GGA32
GGG119
Stop 0.3%
UAA6
UAG3
AGA0
AGG1
Genome map
38 annotated features in NC_057674.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| COX1 | Protein-coding gene | 1 | 1,551 | 1,551 bp | + | 43.5% |
| tRNA-Ser (UCN) | Transfer RNA | 1,552 | 1,622 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 1,624 | 1,694 | 71 bp | + | – |
| COX2 | Protein-coding gene | 1,697 | 2,387 | 691 bp | + | 43.9% |
| tRNA-Lys | Transfer RNA | 2,388 | 2,461 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 2,463 | 2,630 | 168 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 2,621 | 3,304 | 684 bp | + | 43.9% |
| COX3 | Protein-coding gene | 3,337 | 4,122 | 786 bp | + | 45.3% |
| tRNA-Gly | Transfer RNA | 4,122 | 4,191 | 70 bp | + | – |
| ND3 | Protein-coding gene | 4,193 | 4,543 | 351 bp | + | 47.9% |
| tRNA-Arg | Transfer RNA | 4,542 | 4,610 | 69 bp | + | – |
| ND4L | Protein-coding gene | 4,611 | 4,907 | 297 bp | + | 46.1% |
| ND4 | Protein-coding gene | 4,901 | 6,281 | 1,381 bp | + | 45.8% |
| tRNA-His | Transfer RNA | 6,282 | 6,350 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 6,351 | 6,417 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 6,422 | 6,494 | 73 bp | + | – |
| ND5 | Protein-coding gene | 6,495 | 8,333 | 1,839 bp | + | 46.0% |
| CYTB | Protein-coding gene | 8,387 | 9,527 | 1,141 bp | + | 47.5% |
| tRNA-Thr | Transfer RNA | 9,528 | 9,599 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 9,599 | 9,668 | 70 bp | − | – |
| ND6 | Protein-coding gene | 9,877 | 10,395 | 519 bp | − | 53.8% |
| tRNA-Glu | Transfer RNA | 10,396 | 10,463 | 68 bp | − | – |
| tRNA-Ile | Transfer RNA | 11,324 | 11,393 | 70 bp | − | – |
| ND1 | Protein-coding gene | 11,398 | 12,372 | 975 bp | − | 46.7% |
| tRNA-Leu (UUR) | Transfer RNA | 12,373 | 12,446 | 74 bp | − | – |
| 16S rRNA | Ribosomal RNA | 12,447 | 14,137 | 1,691 bp | − | 44.6% |
| tRNA-Val | Transfer RNA | 14,138 | 14,209 | 72 bp | − | – |
| 12S rRNA | Ribosomal RNA | 14,210 | 15,158 | 949 bp | − | 47.0% |
| tRNA-Phe | Transfer RNA | 15,159 | 15,226 | 68 bp | − | – |
| D-loop | Control region | 15,227 | 16,677 | 1,451 bp | – | 37.6% |
| tRNA-Gln | Transfer RNA | 16,678 | 16,749 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 16,749 | 16,817 | 69 bp | + | – |
| ND2 | Protein-coding gene | 16,818 | 17,864 | 1,047 bp | + | 48.9% |
| tRNA-Trp | Transfer RNA | 17,864 | 17,934 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 17,936 | 18,004 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 18,006 | 18,078 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 18,097 | 18,162 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 18,163 | 18,233 | 71 bp | − | – |