Trematomus nicolai
Spotted notothen
GC content
44.34%
Whole genome
Non-coding
3,768 bp
Including the D-loop
Where Spotted notothen sits among 2,335 species
Whole-genome GC content against maximum lifespan. Spotted notothen has the 991st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome19,358 bp
- GC skew (G − C) / (G + C)
- −0.017
- AT skew (A − T) / (A + T)
- −0.134
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome19,358 bp
Protein-coding11,409 bp
12S rRNA945 bp
16S rRNA1,689 bp
All tRNA1,547 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.39% | +0.229 | +0.162 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.32% | −0.115 | −0.234 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.97% | −0.062 | −0.208 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.56% | −0.076 | −0.164 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.07% | −0.101 | −0.051 | |||||
| ATP6ATP synthase F0 subunit 6 | 696 bp | 44.25% | −0.143 | −0.186 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.61% | −0.112 | −0.152 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.85% | −0.102 | −0.396 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.79% | −0.162 | −0.230 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.55% | −0.072 | −0.218 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.41% | −0.121 | −0.163 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 53.76% | −0.211 | +0.225 | |||||
| CYTBCytochrome b | 1,141 bp | 46.89% | −0.114 | −0.234 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 46.98% | +0.014 | −0.118 | |||||
| 16S rRNA16S ribosomal RNA | 1,689 bp | 45.47% | +0.065 | −0.170 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU162
UUC73
Leu L16.5%
UUA103
UUG84
CUU182
CUC92
CUA99
CUG69
Ile I6.6%
AUU185
AUC65
Met M4.1%
AUA79
AUG77
Val V7.3%
GUU94
GUC54
GUA75
GUG55
Ser S6.2%
UCU62
UCC54
UCA36
UCG24
AGU29
AGC31
Pro P5.8%
CCU69
CCC93
CCA32
CCG26
Thr T6.7%
ACU68
ACC76
ACA83
ACG29
Ala A9.8%
GCU102
GCC118
GCA112
GCG42
Tyr Y2.8%
UAU59
UAC48
His H2.7%
CAU63
CAC39
Gln Q2.7%
CAA62
CAG40
Asn N2.8%
AAU60
AAC46
Lys K2.1%
AAA47
AAG33
Asp D2.1%
GAU37
GAC42
Glu E2.4%
GAA39
GAG53
Cys C1.0%
UGU27
UGC13
Trp W3.1%
UGA60
UGG58
Arg R2.0%
CGU21
CGC7
CGA34
CGG15
Gly G7.0%
GGU64
GGC61
GGA25
GGG116
Stop 0.2%
UAA4
UAG2
AGA0
AGG1
Genome map
37 annotated features in NC_065826.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| ND4L | Protein-coding gene | 1 | 297 | 297 bp | + | 45.8% |
| ND4 | Protein-coding gene | 291 | 1,671 | 1,381 bp | + | 45.6% |
| tRNA-His | Transfer RNA | 1,672 | 1,740 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 1,741 | 1,807 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 1,812 | 1,884 | 73 bp | + | – |
| ND5 | Protein-coding gene | 1,885 | 3,723 | 1,839 bp | + | 45.4% |
| CYTB | Protein-coding gene | 3,772 | 4,912 | 1,141 bp | + | 46.9% |
| tRNA-Thr | Transfer RNA | 4,913 | 4,984 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 4,984 | 5,053 | 70 bp | − | – |
| ND6 | Protein-coding gene | 5,662 | 6,180 | 519 bp | − | 53.8% |
| tRNA-Glu | Transfer RNA | 6,181 | 6,248 | 68 bp | − | – |
| tRNA-Ile | Transfer RNA | 7,208 | 7,277 | 70 bp | − | – |
| ND1 | Protein-coding gene | 7,282 | 8,256 | 975 bp | − | 47.4% |
| tRNA-Leu (UUR) | Transfer RNA | 8,257 | 8,330 | 74 bp | − | – |
| 16S rRNA | Ribosomal RNA | 8,331 | 10,019 | 1,689 bp | − | 45.5% |
| tRNA-Val | Transfer RNA | 10,021 | 10,092 | 72 bp | − | – |
| 12S rRNA | Ribosomal RNA | 10,096 | 11,040 | 945 bp | − | 47.0% |
| tRNA-Phe | Transfer RNA | 11,041 | 11,108 | 68 bp | − | – |
| tRNA-Gln | Transfer RNA | 13,188 | 13,259 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 13,259 | 13,327 | 69 bp | + | – |
| ND2 | Protein-coding gene | 13,328 | 14,373 | 1,046 bp | + | 47.3% |
| tRNA-Trp | Transfer RNA | 14,374 | 14,444 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 14,446 | 14,514 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 14,516 | 14,588 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 14,612 | 14,677 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 14,678 | 14,748 | 71 bp | − | – |
| COX1 | Protein-coding gene | 14,750 | 16,300 | 1,551 bp | + | 44.0% |
| tRNA-Ser (UCN) | Transfer RNA | 16,301 | 16,371 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 16,373 | 16,443 | 71 bp | + | – |
| COX2 | Protein-coding gene | 16,446 | 17,136 | 691 bp | + | 43.6% |
| tRNA-Lys | Transfer RNA | 17,137 | 17,210 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 17,212 | 17,379 | 168 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 17,358 | 18,053 | 696 bp | + | 44.3% |
| COX3 | Protein-coding gene | 18,086 | 18,870 | 785 bp | + | 45.6% |
| tRNA-Gly | Transfer RNA | 18,871 | 18,940 | 70 bp | + | – |
| ND3 | Protein-coding gene | 18,941 | 19,289 | 349 bp | + | 47.9% |
| tRNA-Arg | Transfer RNA | 19,290 | 19,358 | 69 bp | + | – |