Trichiurus lepturus

Atlantic cutlassfish

Maximum lifespan

15 yr

AnAge record

mtDNA size

17,060 bp

RefSeq NC_018791.1

GC content

45.55%

Whole genome

Non-coding

1,456 bp

D-loop 1,384 bp

Where Atlantic cutlassfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Atlantic cutlassfish has the 1,214th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,060 bp

GC skew (G − C) / (G + C): −0.289
AT skew (A − T) / (A + T): +0.046

Life history

Maximum lifespan: 15 years
Adult weight: 2.8 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04399)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

A match to a lifespan source is under review and was not used.

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,060 bp

Protein-coding11,439 bp

12S rRNA957 bp

16S rRNA1,725 bp

All tRNA1,483 bp

D-loop1,384 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Trichiurus lepturus genes

ND1NADH dehydrogenase subunit 1	975 bp	26.3%	27.1%	14.7%	32.0%	46.67%	−0.371	−0.015
ND2NADH dehydrogenase subunit 2	1,046 bp	28.1%	24.0%	12.6%	35.3%	47.90%	−0.473	+0.079
COX1Cytochrome c oxidase subunit I	1,551 bp	24.7%	27.7%	18.4%	29.2%	47.65%	−0.226	−0.057
COX2Cytochrome c oxidase subunit II	691 bp	29.4%	25.3%	15.8%	29.5%	45.30%	−0.304	+0.074
ATP8ATP synthase F0 subunit 8	168 bp	29.2%	29.2%	11.9%	29.8%	41.67%	−0.429	0.000
ATP6ATP synthase F0 subunit 6	684 bp	26.5%	27.6%	14.5%	31.4%	45.91%	−0.369	−0.022
COX3Cytochrome c oxidase subunit III	785 bp	23.9%	26.6%	17.3%	32.1%	49.43%	−0.299	−0.053
ND3NADH dehydrogenase subunit 3	349 bp	20.9%	31.2%	15.5%	32.4%	47.85%	−0.353	−0.198
ND4LNADH dehydrogenase subunit 4L	297 bp	22.2%	27.6%	15.8%	34.3%	50.17%	−0.369	−0.108
ND4NADH dehydrogenase subunit 4	1,371 bp	28.1%	26.5%	15.5%	30.0%	45.44%	−0.319	+0.029
ND5NADH dehydrogenase subunit 5	1,881 bp	27.4%	26.0%	13.5%	33.0%	46.52%	−0.419	+0.026
ND6NADH dehydrogenase subunit 6	522 bp	37.0%	15.7%	15.7%	31.6%	47.32%	−0.336	+0.404
CYTBCytochrome b	1,141 bp	24.7%	29.1%	14.8%	31.4%	46.19%	−0.359	−0.081
12S rRNA12S ribosomal RNA	957 bp	31.0%	21.7%	20.7%	26.5%	47.23%	−0.124	+0.176
16S rRNA16S ribosomal RNA	1,725 bp	32.5%	19.7%	18.8%	28.9%	47.77%	−0.211	+0.245
D-loopControl region (D-loop)	1,384 bp	34.1%	34.9%	13.8%	17.2%	31.00%	−0.110	−0.012

Codon usage

Counts per codon, darker is more frequent

Gene

3,818 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.7%

UUU104

UUC152

Leu L16.6%

UUA86

UUG21

CUU132

CUC155

CUA179

CUG59

Ile I7.5%

AUU156

AUC130

Met M4.1%

AUA101

AUG54

Val V5.2%

GUU56

GUC55

GUA62

GUG26

Ser S6.6%

UCU40

UCC77

UCA62

UCG18

AGU11

AGC43

Pro P5.7%

CCU33

CCC106

CCA68

CCG11

Thr T8.4%

ACU42

ACC126

ACA136

ACG18

Ala A9.2%

GCU65

GCC166

GCA106

GCG13

Tyr Y2.9%

UAU34

UAC76

His H2.9%

CAU22

CAC88

Gln Q2.4%

CAA65

CAG26

Asn N3.1%

AAU34

AAC83

Lys K2.0%

AAA65

AAG12

Asp D2.1%

GAU18

GAC61

Glu E2.7%

GAA82

GAG20

Cys C0.9%

UGU7

UGC26

Trp W2.9%

UGA91

UGG21

Arg R2.0%

CGU8

CGC16

CGA50

CGG4

Gly G6.1%

GGU18

GGC73

GGA91

GGG50

Stop 0.2%

UAA6

UAG1

AGA1

AGG0

Genome map

37 annotated features in NC_018791.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA21
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (45.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 37 features as a table

Annotated features of Trichiurus lepturus (NC_018791.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,026	957 bp	+	47.2%
tRNA-Val	Transfer RNA	1,027	1,097	71 bp	+	–
16S rRNA	Ribosomal RNA	1,098	2,822	1,725 bp	+	47.8%
tRNA-Leu (UUR)	Transfer RNA	2,823	2,896	74 bp	+	–
ND1	Protein-coding gene	2,908	3,882	975 bp	+	46.7%
tRNA-Ile	Transfer RNA	3,888	3,957	70 bp	+	–
tRNA-Gln	Transfer RNA	3,957	4,027	71 bp	−	–
tRNA-Met	Transfer RNA	4,027	4,097	71 bp	+	–
ND2	Protein-coding gene	4,099	5,144	1,046 bp	+	47.9%
tRNA-Trp	Transfer RNA	5,145	5,218	74 bp	+	–
tRNA-Ala	Transfer RNA	5,220	5,288	69 bp	−	–
tRNA-Asn	Transfer RNA	5,290	5,362	73 bp	−	–
tRNA-Cys	Transfer RNA	5,394	5,459	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,460	5,526	67 bp	−	–
COX1	Protein-coding gene	5,528	7,078	1,551 bp	+	47.7%
tRNA-Ser (UCN)	Transfer RNA	7,079	7,149	71 bp	−	–
tRNA-Asp	Transfer RNA	7,152	7,224	73 bp	+	–
COX2	Protein-coding gene	7,227	7,917	691 bp	+	45.3%
tRNA-Lys	Transfer RNA	7,918	7,990	73 bp	+	–
ATP8	Protein-coding gene	7,993	8,160	168 bp	+	41.7%
ATP6	Protein-coding gene	8,151	8,834	684 bp	+	45.9%
COX3	Protein-coding gene	8,834	9,618	785 bp	+	49.4%
tRNA-Gly	Transfer RNA	9,619	9,687	69 bp	+	–
ND3	Protein-coding gene	9,688	10,036	349 bp	+	47.9%
tRNA-Arg	Transfer RNA	10,037	10,105	69 bp	+	–
ND4L	Protein-coding gene	10,106	10,402	297 bp	+	50.2%
ND4	Protein-coding gene	10,396	11,766	1,371 bp	+	45.4%
tRNA-His	Transfer RNA	11,774	11,842	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,843	11,913	71 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,916	11,987	72 bp	+	–
ND5	Protein-coding gene	11,990	13,870	1,881 bp	+	46.5%
ND6	Protein-coding gene	13,867	14,388	522 bp	−	47.3%
tRNA-Glu	Transfer RNA	14,389	14,457	69 bp	−	–
CYTB	Protein-coding gene	14,462	15,602	1,141 bp	+	46.2%
tRNA-Thr	Transfer RNA	15,603	15,676	74 bp	+	–
D-loop	Control region	15,677	17,060	1,384 bp	–	31.0%