Triglops pingelii
Ribbed sculpin
GC content
47.74%
Whole genome
Non-coding
1,288 bp
Including the D-loop
Where Ribbed sculpin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Ribbed sculpin has the 1,940th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,884 bp
- GC skew (G − C) / (G + C)
- −0.258
- AT skew (A − T) / (A + T)
- +0.005
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,884 bp
Protein-coding11,407 bp
12S rRNA945 bp
16S rRNA1,691 bp
All tRNA1,553 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.67% | −0.300 | −0.131 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 50.38% | −0.438 | −0.013 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.81% | −0.221 | −0.103 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.74% | −0.269 | −0.011 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 50.60% | −0.365 | +0.157 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 50.59% | −0.399 | −0.130 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.05% | −0.236 | −0.110 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 53.87% | −0.298 | −0.193 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.18% | −0.316 | −0.145 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.52% | −0.293 | −0.103 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 48.34% | −0.381 | +0.008 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.04% | −0.375 | +0.429 | |||||
| CYTBCytochrome b | 1,141 bp | 48.64% | −0.366 | −0.092 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 48.36% | −0.077 | +0.213 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 46.95% | −0.086 | +0.179 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU107
UUC126
Leu L17.3%
UUA64
UUG33
CUU155
CUC172
CUA154
CUG79
Ile I6.7%
AUU121
AUC134
Met M3.9%
AUA80
AUG68
Val V6.2%
GUU64
GUC72
GUA66
GUG33
Ser S6.5%
UCU49
UCC82
UCA46
UCG11
AGU17
AGC43
Pro P5.7%
CCU44
CCC122
CCA35
CCG16
Thr T8.3%
ACU53
ACC155
ACA100
ACG9
Ala A9.2%
GCU73
GCC180
GCA90
GCG6
Tyr Y2.8%
UAU37
UAC70
His H2.8%
CAU28
CAC79
Gln Q2.6%
CAA80
CAG19
Asn N2.9%
AAU30
AAC80
Lys K1.9%
AAA51
AAG20
Asp D2.0%
GAU23
GAC52
Glu E2.6%
GAA60
GAG39
Cys C0.6%
UGU7
UGC17
Trp W3.2%
UGA89
UGG31
Arg R2.1%
CGU10
CGC21
CGA33
CGG15
Gly G6.6%
GGU31
GGC95
GGA53
GGG71
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
37 annotated features in NC_082814.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 48.4% |
| tRNA-Val | Transfer RNA | 1,014 | 1,086 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,777 | 1,691 bp | + | 47.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,851 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,852 | 3,826 | 975 bp | + | 50.7% |
| tRNA-Ile | Transfer RNA | 3,831 | 3,900 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,900 | 3,970 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,970 | 4,038 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,039 | 5,084 | 1,046 bp | + | 50.4% |
| tRNA-Trp | Transfer RNA | 5,085 | 5,155 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,157 | 5,225 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,227 | 5,299 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,337 | 5,402 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,403 | 5,473 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,475 | 7,025 | 1,551 bp | + | 48.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,026 | 7,096 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,100 | 7,172 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,180 | 7,870 | 691 bp | + | 46.7% |
| tRNA-Lys | Transfer RNA | 7,871 | 7,944 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,946 | 8,113 | 168 bp | + | 50.6% |
| ATP6 | Protein-coding gene | 8,104 | 8,787 | 684 bp | + | 50.6% |
| COX3 | Protein-coding gene | 8,787 | 9,571 | 785 bp | + | 49.1% |
| tRNA-Gly | Transfer RNA | 9,572 | 9,644 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,645 | 9,993 | 349 bp | + | 53.9% |
| tRNA-Arg | Transfer RNA | 9,994 | 10,062 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,063 | 10,359 | 297 bp | + | 51.2% |
| ND4 | Protein-coding gene | 10,353 | 11,733 | 1,381 bp | + | 48.5% |
| tRNA-His | Transfer RNA | 11,734 | 11,802 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,803 | 11,870 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,875 | 11,947 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,948 | 13,786 | 1,839 bp | + | 48.3% |
| ND6 | Protein-coding gene | 13,783 | 14,304 | 522 bp | − | 49.0% |
| tRNA-Glu | Transfer RNA | 14,305 | 14,373 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,378 | 15,518 | 1,141 bp | + | 48.6% |
| tRNA-Thr | Transfer RNA | 15,519 | 15,590 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,590 | 15,659 | 70 bp | − | – |