Triglops scepticus
Spectacled sculpin
GC content
46.75%
Whole genome
Non-coding
1,137 bp
Including the D-loop
Where Spectacled sculpin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Spectacled sculpin has the 1,764th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,734 bp
- GC skew (G − C) / (G + C)
- −0.255
- AT skew (A − T) / (A + T)
- +0.009
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,734 bp
Protein-coding11,407 bp
12S rRNA945 bp
16S rRNA1,693 bp
All tRNA1,552 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.28% | −0.302 | −0.113 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.38% | −0.423 | −0.044 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.07% | −0.211 | −0.128 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.02% | −0.283 | +0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.62% | −0.425 | +0.136 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 51.17% | −0.406 | −0.120 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.17% | −0.259 | −0.078 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 50.72% | −0.311 | −0.163 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.18% | −0.303 | −0.131 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.08% | −0.319 | −0.063 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.46% | −0.359 | −0.005 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.85% | −0.396 | +0.408 | |||||
| CYTBCytochrome b | 1,141 bp | 48.38% | −0.326 | −0.107 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 48.15% | −0.077 | +0.220 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.60% | −0.093 | +0.199 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU122
UUC106
Leu L17.3%
UUA76
UUG26
CUU160
CUC168
CUA162
CUG68
Ile I6.9%
AUU113
AUC151
Met M3.9%
AUA74
AUG75
Val V6.1%
GUU71
GUC49
GUA83
GUG28
Ser S6.5%
UCU63
UCC61
UCA51
UCG12
AGU13
AGC48
Pro P5.7%
CCU57
CCC106
CCA39
CCG15
Thr T8.4%
ACU66
ACC135
ACA106
ACG12
Ala A9.1%
GCU85
GCC169
GCA86
GCG5
Tyr Y2.8%
UAU32
UAC76
His H2.8%
CAU28
CAC79
Gln Q2.6%
CAA83
CAG16
Asn N2.9%
AAU40
AAC69
Lys K1.9%
AAA55
AAG16
Asp D2.0%
GAU29
GAC46
Glu E2.6%
GAA64
GAG35
Cys C0.6%
UGU7
UGC17
Trp W3.2%
UGA93
UGG27
Arg R2.0%
CGU11
CGC20
CGA37
CGG10
Gly G6.5%
GGU26
GGC89
GGA60
GGG74
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082789.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 48.2% |
| tRNA-Val | Transfer RNA | 1,014 | 1,085 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,778 | 1,693 bp | + | 46.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,779 | 2,852 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,853 | 3,827 | 975 bp | + | 47.3% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,901 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,901 | 3,971 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,971 | 4,039 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,040 | 5,085 | 1,046 bp | + | 48.4% |
| tRNA-Trp | Transfer RNA | 5,086 | 5,156 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,158 | 5,226 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,228 | 5,300 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,403 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,404 | 5,473 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,475 | 7,025 | 1,551 bp | + | 47.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,026 | 7,096 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,100 | 7,172 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,180 | 7,870 | 691 bp | + | 46.0% |
| tRNA-Lys | Transfer RNA | 7,871 | 7,944 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,946 | 8,113 | 168 bp | + | 47.6% |
| ATP6 | Protein-coding gene | 8,104 | 8,787 | 684 bp | + | 51.2% |
| COX3 | Protein-coding gene | 8,787 | 9,571 | 785 bp | + | 49.2% |
| tRNA-Gly | Transfer RNA | 9,572 | 9,644 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,645 | 9,993 | 349 bp | + | 50.7% |
| tRNA-Arg | Transfer RNA | 9,994 | 10,062 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,063 | 10,359 | 297 bp | + | 51.2% |
| ND4 | Protein-coding gene | 10,353 | 11,733 | 1,381 bp | + | 48.1% |
| tRNA-His | Transfer RNA | 11,734 | 11,802 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,803 | 11,870 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,875 | 11,947 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,948 | 13,786 | 1,839 bp | + | 45.5% |
| ND6 | Protein-coding gene | 13,783 | 14,304 | 522 bp | − | 48.9% |
| tRNA-Glu | Transfer RNA | 14,305 | 14,373 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,378 | 15,518 | 1,141 bp | + | 48.4% |
| tRNA-Thr | Transfer RNA | 15,519 | 15,590 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,590 | 15,660 | 71 bp | − | – |