Tringa stagnatilis

Marsh sandpiper

Maximum lifespan

8.5 yr

AnAge record

mtDNA size

16,799 bp

RefSeq NC_056273.1

GC content

43.02%

Whole genome

Non-coding

1,327 bp

D-loop 1,245 bp

Where Marsh sandpiper sits among 2,335 species

Whole-genome GC content against maximum lifespan. Marsh sandpiper has the 1,707th longest lifespan of them.

This species
Other birds
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,799 bp

GC skew (G − C) / (G + C): −0.372
AT skew (A − T) / (A + T): +0.106

Life history

Maximum lifespan: 8.5 years
Adult weight: 77.5 g
Female sexual maturity: 363 days

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 00560)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,799 bp

Protein-coding11,376 bp

12S rRNA969 bp

16S rRNA1,592 bp

All tRNA1,546 bp

D-loop1,245 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Tringa stagnatilis genes

ND1NADH dehydrogenase subunit 1	978 bp	28.7%	29.0%	11.8%	30.5%	42.23%	−0.443	−0.005
ND2NADH dehydrogenase subunit 2	1,039 bp	33.1%	25.5%	9.5%	31.9%	41.39%	−0.540	+0.130
COX1Cytochrome c oxidase subunit I	1,551 bp	28.0%	27.3%	15.5%	29.1%	44.62%	−0.303	+0.013
COX2Cytochrome c oxidase subunit II	684 bp	30.4%	25.7%	14.0%	29.5%	43.70%	−0.356	+0.083
ATP8ATP synthase F0 subunit 8	168 bp	33.9%	25.0%	4.2%	36.9%	41.07%	−0.797	+0.152
ATP6ATP synthase F0 subunit 6	684 bp	28.8%	26.3%	8.9%	36.0%	44.88%	−0.603	+0.045
COX3Cytochrome c oxidase subunit III	784 bp	29.0%	26.3%	15.3%	29.5%	44.77%	−0.316	+0.049
ND3NADH dehydrogenase subunit 3	351 bp	30.2%	24.5%	11.1%	34.2%	45.30%	−0.509	+0.104
ND4LNADH dehydrogenase subunit 4L	297 bp	29.6%	26.6%	12.8%	31.0%	43.77%	−0.415	+0.054
ND4NADH dehydrogenase subunit 4	1,378 bp	31.7%	26.2%	9.4%	32.7%	42.09%	−0.555	+0.095
ND5NADH dehydrogenase subunit 5	1,815 bp	32.9%	25.2%	11.0%	30.8%	41.81%	−0.475	+0.132
ND6NADH dehydrogenase subunit 6	522 bp	43.5%	13.0%	8.6%	34.9%	43.49%	−0.604	+0.539
CYTBCytochrome b	1,143 bp	29.7%	26.7%	11.9%	31.8%	43.66%	−0.455	+0.053
12S rRNA12S ribosomal RNA	969 bp	32.2%	21.8%	19.9%	26.1%	46.03%	−0.135	+0.193
16S rRNA16S ribosomal RNA	1,592 bp	34.2%	23.1%	18.3%	24.2%	42.62%	−0.139	+0.194
D-loopControl region (D-loop)	1,245 bp	30.2%	27.5%	15.9%	26.4%	42.33%	−0.249	+0.047

Codon usage

Counts per codon, darker is more frequent

Gene

3,793 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU73

UUC149

Leu L17.5%

UUA111

UUG18

CUU82

CUC134

CUA300

CUG17

Ile I7.8%

AUU128

AUC167

Met M4.6%

AUA151

AUG25

Val V4.4%

GUU43

GUC38

GUA73

GUG13

Ser S7.4%

UCU45

UCC72

UCA103

UCG7

AGU13

AGC42

Pro P5.8%

CCU31

CCC69

CCA116

CCG4

Thr T9.3%

ACU79

ACC144

ACA127

ACG1

Ala A7.8%

GCU58

GCC128

GCA103

GCG5

Tyr Y3.0%

UAU41

UAC73

His H2.7%

CAU35

CAC69

Gln Q2.5%

CAA91

CAG3

Asn N3.5%

AAU29

AAC103

Lys K2.3%

AAA86

AAG1

Asp D1.7%

GAU20

GAC45

Glu E2.4%

GAA83

GAG8

Cys C0.8%

UGU8

UGC21

Trp W2.8%

UGA100

UGG7

Arg R1.9%

CGU11

CGC20

CGA34

CGG6

Gly G5.8%

GGU34

GGC61

GGA105

GGG20

Stop 0.3%

UAA6

UAG1

AGA1

AGG2

Genome map

38 annotated features in NC_056273.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Tringa stagnatilis (NC_056273.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	71	71 bp	+	–
12S rRNA	Ribosomal RNA	72	1,040	969 bp	+	46.0%
tRNA-Val	Transfer RNA	1,041	1,112	72 bp	+	–
16S rRNA	Ribosomal RNA	1,113	2,704	1,592 bp	+	42.6%
tRNA-Leu (UUR)	Transfer RNA	2,706	2,779	74 bp	+	–
ND1	Protein-coding gene	2,793	3,770	978 bp	+	42.2%
tRNA-Ile	Transfer RNA	3,769	3,840	72 bp	+	–
tRNA-Gln	Transfer RNA	3,850	3,920	71 bp	−	–
tRNA-Met	Transfer RNA	3,920	3,988	69 bp	+	–
ND2	Protein-coding gene	3,989	5,027	1,039 bp	+	41.4%
tRNA-Trp	Transfer RNA	5,028	5,097	70 bp	+	–
tRNA-Ala	Transfer RNA	5,099	5,167	69 bp	−	–
tRNA-Asn	Transfer RNA	5,170	5,242	73 bp	−	–
tRNA-Cys	Transfer RNA	5,245	5,311	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,311	5,381	71 bp	−	–
COX1	Protein-coding gene	5,383	6,933	1,551 bp	+	44.6%
tRNA-Ser (UCN)	Transfer RNA	6,925	6,998	74 bp	−	–
tRNA-Asp	Transfer RNA	7,001	7,069	69 bp	+	–
COX2	Protein-coding gene	7,071	7,754	684 bp	+	43.7%
tRNA-Lys	Transfer RNA	7,756	7,826	71 bp	+	–
ATP8	Protein-coding gene	7,828	7,995	168 bp	+	41.1%
ATP6	Protein-coding gene	7,986	8,669	684 bp	+	44.9%
COX3	Protein-coding gene	8,669	9,452	784 bp	+	44.8%
tRNA-Gly	Transfer RNA	9,453	9,521	69 bp	+	–
ND3	Protein-coding gene	9,522	9,873	352 bp	+	45.3%
tRNA-Arg	Transfer RNA	9,878	9,946	69 bp	+	–
ND4L	Protein-coding gene	9,948	10,244	297 bp	+	43.8%
ND4	Protein-coding gene	10,238	11,615	1,378 bp	+	42.1%
tRNA-His	Transfer RNA	11,616	11,684	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,685	11,750	66 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,750	11,820	71 bp	+	–
ND5	Protein-coding gene	11,821	13,635	1,815 bp	+	41.8%
CYTB	Protein-coding gene	13,648	14,790	1,143 bp	+	43.7%
tRNA-Thr	Transfer RNA	14,793	14,862	70 bp	+	–
tRNA-Pro	Transfer RNA	14,876	14,945	70 bp	−	–
ND6	Protein-coding gene	14,958	15,479	522 bp	−	43.5%
tRNA-Glu	Transfer RNA	15,483	15,554	72 bp	−	–
D-loop	Control region	15,555	16,799	1,245 bp	–	42.3%