Triplophysa yarkandensis
Kashgarian loach
GC content
44.58%
Whole genome
Non-coding
984 bp
D-loop 918 bp
Where Kashgarian loach sits among 2,335 species
Whole-genome GC content against maximum lifespan. Kashgarian loach has the 1,871st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,574 bp
- GC skew (G − C) / (G + C)
- −0.148
- AT skew (A − T) / (A + T)
- −0.018
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,574 bp
Protein-coding11,406 bp
12S rRNA951 bp
16S rRNA1,678 bp
All tRNA1,555 bp
D-loop918 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.56% | −0.167 | −0.179 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.08% | −0.228 | −0.103 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.36% | −0.102 | −0.112 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.85% | −0.162 | −0.046 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.353 | +0.100 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.08% | −0.260 | −0.132 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 43.88% | −0.145 | −0.091 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.70% | −0.179 | −0.150 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.257 | −0.185 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 45.59% | −0.133 | −0.093 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.18% | −0.184 | −0.064 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 50.58% | −0.265 | +0.310 | |||||
| CYTBCytochrome b | 1,141 bp | 43.03% | −0.185 | −0.123 | |||||
| 12S rRNA12S ribosomal RNA | 951 bp | 50.47% | −0.054 | +0.189 | |||||
| 16S rRNA16S ribosomal RNA | 1,678 bp | 44.76% | −0.041 | +0.210 | |||||
| D-loopControl region (D-loop) | 918 bp | 35.51% | −0.172 | +0.034 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU136
UUC91
Leu L15.8%
UUA103
UUG60
CUU136
CUC72
CUA154
CUG78
Ile I7.1%
AUU181
AUC89
Met M4.8%
AUA97
AUG86
Val V6.6%
GUU88
GUC37
GUA80
GUG48
Ser S6.5%
UCU55
UCC53
UCA69
UCG17
AGU18
AGC34
Pro P5.6%
CCU62
CCC47
CCA81
CCG24
Thr T7.7%
ACU88
ACC78
ACA95
ACG32
Ala A9.5%
GCU108
GCC112
GCA106
GCG36
Tyr Y2.9%
UAU52
UAC58
His H2.8%
CAU41
CAC67
Gln Q2.5%
CAA61
CAG34
Asn N2.9%
AAU43
AAC67
Lys K2.0%
AAA54
AAG22
Asp D2.0%
GAU36
GAC41
Glu E2.7%
GAA56
GAG46
Cys C0.7%
UGU11
UGC16
Trp W3.2%
UGA78
UGG42
Arg R2.0%
CGU22
CGC16
CGA27
CGG13
Gly G6.5%
GGU46
GGC61
GGA75
GGG64
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_027517.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,020 | 951 bp | + | 50.5% |
| tRNA-Val | Transfer RNA | 1,021 | 1,092 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,770 | 1,678 bp | + | 44.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,771 | 2,845 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,846 | 3,820 | 975 bp | + | 46.6% |
| tRNA-Ile | Transfer RNA | 3,829 | 3,900 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,899 | 3,969 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,971 | 4,039 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,040 | 5,084 | 1,045 bp | + | 47.1% |
| tRNA-Trp | Transfer RNA | 5,085 | 5,153 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,156 | 5,224 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,226 | 5,298 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,330 | 5,395 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,396 | 5,464 | 69 bp | − | – |
| COX1 | Protein-coding gene | 5,466 | 7,016 | 1,551 bp | + | 44.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,018 | 7,088 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,092 | 7,164 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,178 | 7,868 | 691 bp | + | 43.9% |
| tRNA-Lys | Transfer RNA | 7,869 | 7,944 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,946 | 8,113 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,104 | 8,787 | 684 bp | + | 41.1% |
| COX3 | Protein-coding gene | 8,787 | 9,570 | 784 bp | + | 43.9% |
| tRNA-Gly | Transfer RNA | 9,571 | 9,644 | 74 bp | + | – |
| ND3 | Protein-coding gene | 9,645 | 9,993 | 349 bp | + | 44.7% |
| tRNA-Arg | Transfer RNA | 9,994 | 10,063 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,064 | 10,360 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,354 | 11,735 | 1,382 bp | + | 45.6% |
| tRNA-His | Transfer RNA | 11,736 | 11,805 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,806 | 11,874 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,874 | 11,946 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,947 | 13,785 | 1,839 bp | + | 43.2% |
| ND6 | Protein-coding gene | 13,782 | 14,303 | 522 bp | − | 50.6% |
| tRNA-Glu | Transfer RNA | 14,304 | 14,372 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,377 | 15,517 | 1,141 bp | + | 43.0% |
| tRNA-Thr | Transfer RNA | 15,518 | 15,588 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,587 | 15,656 | 70 bp | − | – |
| D-loop | Control region | 15,657 | 16,574 | 918 bp | – | 35.5% |