Upeneus japonicus
Japanese goatfish
GC content
47.86%
Whole genome
Non-coding
958 bp
Including the D-loop
Where Japanese goatfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Japanese goatfish has the 2,051st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,535 bp
- GC skew (G − C) / (G + C)
- −0.218
- AT skew (A − T) / (A + T)
- −0.001
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an estimate, not an observed animal
- Data quality
- low
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,535 bp
Protein-coding11,405 bp
12S rRNA949 bp
16S rRNA1,669 bp
All tRNA1,555 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.62% | −0.253 | −0.154 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,044 bp | 49.23% | −0.319 | −0.064 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.65% | −0.194 | −0.131 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.02% | −0.189 | +0.003 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 49.41% | −0.373 | +0.106 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.61% | −0.250 | −0.070 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 50.70% | −0.261 | −0.075 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.86% | −0.271 | −0.214 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.51% | −0.373 | −0.211 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 50.47% | −0.288 | −0.058 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 49.10% | −0.329 | −0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.23% | −0.230 | +0.351 | |||||
| CYTBCytochrome b | 1,141 bp | 48.47% | −0.295 | −0.082 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 49.84% | −0.087 | +0.172 | |||||
| 16S rRNA16S ribosomal RNA | 1,669 bp | 45.36% | −0.041 | +0.200 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU73
UUC167
Leu L16.5%
UUA68
UUG26
CUU139
CUC141
CUA164
CUG91
Ile I6.8%
AUU124
AUC136
Met M4.4%
AUA32
AUG136
Val V6.6%
GUU71
GUC78
GUA64
GUG39
Ser S6.3%
UCU59
UCC66
UCA51
UCG17
AGU7
AGC41
Pro P5.8%
CCU62
CCC82
CCA59
CCG17
Thr T7.4%
ACU48
ACC106
ACA102
ACG25
Ala A9.6%
GCU55
GCC174
GCA114
GCG21
Tyr Y2.9%
UAU46
UAC65
His H3.0%
CAU31
CAC82
Gln Q2.4%
CAA68
CAG22
Asn N3.0%
AAU41
AAC72
Lys K1.8%
AAA57
AAG13
Asp D2.0%
GAU21
GAC55
Glu E2.7%
GAA61
GAG42
Cys C0.7%
UGU7
UGC20
Trp W3.1%
UGA99
UGG18
Arg R2.1%
CGU23
CGC15
CGA32
CGG10
Gly G6.4%
GGU32
GGC97
GGA64
GGG51
Stop 0.2%
UAA5
UAG2
AGA1
AGG0
Genome map
37 annotated features in NC_063704.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 843 | 911 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 912 | 1,860 | 949 bp | + | 49.8% |
| tRNA-Val | Transfer RNA | 1,860 | 1,931 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,956 | 3,624 | 1,669 bp | + | 45.4% |
| tRNA-Leu (UUR) | Transfer RNA | 3,627 | 3,700 | 74 bp | + | – |
| ND1 | Protein-coding gene | 3,701 | 4,675 | 975 bp | + | 48.6% |
| tRNA-Ile | Transfer RNA | 4,678 | 4,748 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,748 | 4,818 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,818 | 4,887 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,889 | 5,932 | 1,044 bp | + | 49.2% |
| tRNA-Trp | Transfer RNA | 5,942 | 6,012 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 6,013 | 6,081 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 6,083 | 6,155 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 6,187 | 6,253 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 6,254 | 6,323 | 70 bp | − | – |
| COX1 | Protein-coding gene | 6,325 | 7,875 | 1,551 bp | + | 47.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,896 | 7,966 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,969 | 8,041 | 73 bp | + | – |
| COX2 | Protein-coding gene | 8,048 | 8,738 | 691 bp | + | 46.0% |
| tRNA-Lys | Transfer RNA | 8,739 | 8,812 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,816 | 8,983 | 168 bp | + | 49.4% |
| ATP6 | Protein-coding gene | 8,974 | 9,657 | 684 bp | + | 45.6% |
| COX3 | Protein-coding gene | 9,657 | 10,441 | 785 bp | + | 50.7% |
| tRNA-Gly | Transfer RNA | 10,442 | 10,512 | 71 bp | + | – |
| ND3 | Protein-coding gene | 10,513 | 10,861 | 349 bp | + | 51.9% |
| tRNA-Arg | Transfer RNA | 10,862 | 10,930 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,931 | 11,227 | 297 bp | + | 50.5% |
| ND4 | Protein-coding gene | 11,221 | 12,601 | 1,381 bp | + | 50.5% |
| tRNA-His | Transfer RNA | 12,602 | 12,672 | 71 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,673 | 12,740 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,743 | 12,815 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,816 | 14,654 | 1,839 bp | + | 49.1% |
| ND6 | Protein-coding gene | 14,651 | 15,172 | 522 bp | − | 49.2% |
| tRNA-Glu | Transfer RNA | 15,173 | 15,241 | 69 bp | − | – |
| CYTB | Protein-coding gene | 15,247 | 16,387 | 1,141 bp | + | 48.5% |
| tRNA-Thr | Transfer RNA | 16,388 | 16,459 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 16,459 | 16,528 | 70 bp | − | – |