Upeneus sulphureus
Sulphur goatfish
GC content
46.30%
Whole genome
Non-coding
1,304 bp
D-loop 1,213 bp
Where Sulphur goatfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Sulphur goatfish has the 2,064th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,925 bp
- GC skew (G − C) / (G + C)
- −0.237
- AT skew (A − T) / (A + T)
- +0.014
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,925 bp
Protein-coding11,406 bp
12S rRNA964 bp
16S rRNA1,693 bp
All tRNA1,558 bp
D-loop1,213 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.72% | −0.309 | −0.124 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.71% | −0.367 | +0.007 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.97% | −0.170 | −0.067 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.14% | −0.233 | +0.026 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.462 | +0.044 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.44% | −0.303 | −0.105 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 50.32% | −0.256 | −0.067 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.13% | −0.255 | −0.170 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.352 | −0.132 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.37% | −0.320 | −0.010 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.93% | −0.367 | +0.004 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.94% | −0.314 | +0.350 | |||||
| CYTBCytochrome b | 1,141 bp | 47.24% | −0.332 | −0.073 | |||||
| 12S rRNA12S ribosomal RNA | 964 bp | 50.31% | −0.089 | +0.111 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 45.48% | −0.031 | +0.216 | |||||
| D-loopControl region (D-loop) | 1,213 bp | 35.28% | −0.206 | −0.024 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU57
UUC170
Leu L17.2%
UUA64
UUG17
CUU153
CUC136
CUA213
CUG71
Ile I6.8%
AUU135
AUC122
Met M4.0%
AUA42
AUG111
Val V6.6%
GUU62
GUC72
GUA91
GUG26
Ser S6.4%
UCU56
UCC56
UCA67
UCG14
AGU6
AGC45
Pro P5.6%
CCU66
CCC71
CCA62
CCG15
Thr T7.9%
ACU61
ACC104
ACA116
ACG18
Ala A9.3%
GCU70
GCC150
GCA120
GCG15
Tyr Y3.0%
UAU45
UAC71
His H2.7%
CAU30
CAC72
Gln Q2.4%
CAA77
CAG15
Asn N2.9%
AAU41
AAC69
Lys K1.9%
AAA62
AAG12
Asp D2.1%
GAU26
GAC55
Glu E2.7%
GAA75
GAG26
Cys C0.7%
UGU4
UGC24
Trp W3.0%
UGA101
UGG13
Arg R2.2%
CGU21
CGC12
CGA41
CGG8
Gly G6.5%
GGU48
GGC87
GGA69
GGG42
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_063690.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,033 | 964 bp | + | 50.3% |
| tRNA-Val | Transfer RNA | 1,034 | 1,105 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,106 | 2,798 | 1,693 bp | + | 45.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,799 | 2,872 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,873 | 3,847 | 975 bp | + | 48.7% |
| tRNA-Ile | Transfer RNA | 3,851 | 3,921 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,921 | 3,991 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,007 | 4,076 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,078 | 5,122 | 1,045 bp | + | 48.7% |
| tRNA-Trp | Transfer RNA | 5,123 | 5,195 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,196 | 5,264 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,266 | 5,338 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,372 | 5,438 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,439 | 5,508 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,510 | 7,060 | 1,551 bp | + | 46.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,081 | 7,151 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,155 | 7,227 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,234 | 7,924 | 691 bp | + | 44.1% |
| tRNA-Lys | Transfer RNA | 7,925 | 7,998 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,000 | 8,167 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,158 | 8,841 | 684 bp | + | 44.4% |
| COX3 | Protein-coding gene | 8,841 | 9,625 | 785 bp | + | 50.3% |
| tRNA-Gly | Transfer RNA | 9,626 | 9,696 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,697 | 10,045 | 349 bp | + | 46.1% |
| tRNA-Arg | Transfer RNA | 10,046 | 10,114 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,115 | 10,411 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,405 | 11,785 | 1,381 bp | + | 48.4% |
| tRNA-His | Transfer RNA | 11,786 | 11,855 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,856 | 11,924 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,928 | 12,000 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,001 | 13,839 | 1,839 bp | + | 46.9% |
| ND6 | Protein-coding gene | 13,836 | 14,357 | 522 bp | − | 46.9% |
| tRNA-Glu | Transfer RNA | 14,358 | 14,426 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,431 | 15,571 | 1,141 bp | + | 47.2% |
| tRNA-Thr | Transfer RNA | 15,572 | 15,643 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,643 | 15,712 | 70 bp | − | – |
| D-loop | Control region | 15,713 | 16,925 | 1,213 bp | – | 35.3% |