Variola albimarginata

White-edged lyretail

Maximum lifespan

5 yr

FishBase record

mtDNA size

16,768 bp

RefSeq NC_022139.1

GC content

43.94%

Whole genome

Non-coding

1,072 bp

D-loop 979 bp

Where White-edged lyretail sits among 2,335 species

Whole-genome GC content against maximum lifespan. White-edged lyretail has the 2,040th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,768 bp

GC skew (G − C) / (G + C): −0.256
AT skew (A − T) / (A + T): +0.012

Life history

Maximum lifespan: 5 years

Lifespan from FishBase · FishBase record

About this record

Lifespan source: FishBase v26.06
Based on: an observed animal, origin not stated
Data quality: acceptable
Licence: CC BY-NC 4.0
Status: New in build 2
In the database since: build 2 (2026-11-13)

The lifespan value is for non-commercial use only; the genome data is not restricted by it.

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,768 bp

Protein-coding11,406 bp

12S rRNA959 bp

16S rRNA1,695 bp

All tRNA1,636 bp

D-loop979 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Variola albimarginata genes

ND1NADH dehydrogenase subunit 1	975 bp	26.1%	30.2%	14.9%	28.9%	43.80%	−0.321	−0.073
ND2NADH dehydrogenase subunit 2	1,045 bp	26.5%	26.7%	12.4%	34.4%	46.79%	−0.468	−0.004
COX1Cytochrome c oxidase subunit I	1,551 bp	24.0%	31.8%	18.8%	25.4%	44.17%	−0.150	−0.139
COX2Cytochrome c oxidase subunit II	691 bp	27.2%	32.1%	16.9%	23.7%	40.67%	−0.167	−0.083
ATP8ATP synthase F0 subunit 8	168 bp	29.8%	26.2%	10.7%	33.3%	44.05%	−0.514	+0.064
ATP6ATP synthase F0 subunit 6	684 bp	28.4%	30.8%	11.7%	29.1%	40.79%	−0.427	−0.042
COX3Cytochrome c oxidase subunit III	785 bp	25.5%	29.2%	16.8%	28.5%	45.35%	−0.258	−0.068
ND3NADH dehydrogenase subunit 3	349 bp	22.6%	34.4%	14.6%	28.4%	42.98%	−0.320	−0.206
ND4LNADH dehydrogenase subunit 4L	297 bp	21.2%	30.0%	16.8%	32.0%	48.82%	−0.310	−0.171
ND4NADH dehydrogenase subunit 4	1,381 bp	28.3%	29.3%	14.3%	28.2%	42.43%	−0.328	−0.016
ND5NADH dehydrogenase subunit 5	1,839 bp	28.8%	28.4%	12.8%	30.1%	42.85%	−0.404	+0.007
ND6NADH dehydrogenase subunit 6	522 bp	37.5%	18.8%	14.0%	29.7%	43.68%	−0.360	+0.333
CYTBCytochrome b	1,141 bp	25.7%	30.7%	15.6%	28.0%	43.65%	−0.285	−0.089
12S rRNA12S ribosomal RNA	959 bp	30.3%	20.9%	22.0%	26.8%	48.80%	−0.098	+0.185
16S rRNA16S ribosomal RNA	1,695 bp	33.0%	21.0%	20.6%	25.3%	45.96%	−0.101	+0.223
D-loopControl region (D-loop)	979 bp	30.4%	30.6%	14.5%	24.4%	38.92%	−0.255	−0.003

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU112

UUC117

Leu L17.3%

UUA133

UUG17

CUU189

CUC124

CUA166

CUG30

Ile I7.1%

AUU164

AUC106

Met M4.1%

AUA102

AUG55

Val V6.0%

GUU76

GUC58

GUA77

GUG18

Ser S6.3%

UCU57

UCC55

UCA66

UCG7

AGU17

AGC36

Pro P5.8%

CCU86

CCC63

CCA61

CCG10

Thr T8.0%

ACU63

ACC97

ACA128

ACG18

Ala A8.9%

GCU83

GCC116

GCA117

GCG21

Tyr Y3.1%

UAU43

UAC74

His H2.8%

CAU35

CAC71

Gln Q2.7%

CAA88

CAG13

Asn N3.1%

AAU39

AAC78

Lys K2.0%

AAA68

AAG10

Asp D2.1%

GAU27

GAC53

Glu E2.5%

GAA78

GAG19

Cys C0.6%

UGU7

UGC17

Trp W3.0%

UGA99

UGG17

Arg R2.0%

CGU15

CGC10

CGA45

CGG8

Gly G6.3%

GGU62

GGC70

GGA71

GGG38

Stop 0.2%

UAA5

UAG2

AGA0

AGG0

Genome map

39 annotated features in NC_022139.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA23
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 39 features as a table

Annotated features of Variola albimarginata (NC_022139.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,028	959 bp	+	48.8%
tRNA-Val	Transfer RNA	1,031	1,103	73 bp	+	–
tRNA-Ile	Transfer RNA	1,117	1,192	76 bp	+	–
16S rRNA	Ribosomal RNA	1,196	2,890	1,695 bp	+	46.0%
tRNA-Leu (UUR)	Transfer RNA	2,891	2,964	74 bp	+	–
ND1	Protein-coding gene	2,965	3,939	975 bp	+	43.8%
tRNA-Ile	Transfer RNA	3,944	4,013	70 bp	+	–
tRNA-Gln	Transfer RNA	4,013	4,083	71 bp	−	–
tRNA-Met	Transfer RNA	4,083	4,152	70 bp	+	–
ND2	Protein-coding gene	4,153	5,197	1,045 bp	+	46.8%
tRNA-Trp	Transfer RNA	5,198	5,269	72 bp	+	–
tRNA-Ala	Transfer RNA	5,271	5,339	69 bp	−	–
tRNA-Asn	Transfer RNA	5,341	5,413	73 bp	−	–
tRNA-Cys	Transfer RNA	5,453	5,518	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,519	5,588	70 bp	−	–
COX1	Protein-coding gene	5,590	7,140	1,551 bp	+	44.2%
tRNA-Ser (UCN)	Transfer RNA	7,141	7,211	71 bp	−	–
tRNA-Asp	Transfer RNA	7,214	7,287	74 bp	+	–
COX2	Protein-coding gene	7,296	7,986	691 bp	+	40.7%
tRNA-Lys	Transfer RNA	7,987	8,059	73 bp	+	–
ATP8	Protein-coding gene	8,061	8,228	168 bp	+	44.1%
ATP6	Protein-coding gene	8,219	8,902	684 bp	+	40.8%
COX3	Protein-coding gene	8,902	9,686	785 bp	+	45.4%
tRNA-Gly	Transfer RNA	9,687	9,757	71 bp	+	–
ND3	Protein-coding gene	9,758	10,106	349 bp	+	43.0%
tRNA-Arg	Transfer RNA	10,107	10,175	69 bp	+	–
ND4L	Protein-coding gene	10,176	10,472	297 bp	+	48.8%
ND4	Protein-coding gene	10,466	11,846	1,381 bp	+	42.4%
tRNA-His	Transfer RNA	11,847	11,919	73 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,920	11,989	70 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,999	12,071	73 bp	+	–
ND5	Protein-coding gene	12,072	13,910	1,839 bp	+	42.9%
ND6	Protein-coding gene	13,907	14,428	522 bp	−	43.7%
tRNA-Glu	Transfer RNA	14,429	14,497	69 bp	−	–
CYTB	Protein-coding gene	14,507	15,647	1,141 bp	+	43.7%
tRNA-Thr	Transfer RNA	15,648	15,719	72 bp	+	–
tRNA-Pro	Transfer RNA	15,719	15,789	71 bp	−	–
D-loop	Control region	15,790	16,768	979 bp	–	38.9%