Vombatus ursinus

Coarse-haired wombat

Maximum lifespan

30 yr

AnAge record

mtDNA size

16,996 bp

RefSeq NC_003322.1

GC content

39.61%

Whole genome

Non-coding

1,661 bp

D-loop 1,538 bp

Where Coarse-haired wombat sits among 2,335 species

Whole-genome GC content against maximum lifespan. Coarse-haired wombat has the 453rd longest lifespan of them.

This species
Other mammals
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,996 bp

GC skew (G − C) / (G + C): −0.360
AT skew (A − T) / (A + T): +0.111

Life history

Maximum lifespan: 30 years
Adult weight: 25.5 kg
Birth weight: 500 mg
Female sexual maturity: 2 years
Male sexual maturity: 2 years
Gestation or incubation: 27 days
Litter or clutch size: 1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02578)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, small sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,996 bp

Protein-coding11,333 bp

12S rRNA959 bp

16S rRNA1,558 bp

All tRNA1,497 bp

D-loop1,538 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Vombatus ursinus genes

ND1NADH dehydrogenase subunit 1	957 bp	31.1%	28.6%	11.5%	28.7%	40.23%	−0.429	+0.042
ND2NADH dehydrogenase subunit 2	1,044 bp	35.0%	25.6%	8.7%	30.7%	39.46%	−0.558	+0.155
COX1Cytochrome c oxidase subunit I	1,542 bp	28.3%	30.2%	16.0%	25.5%	41.51%	−0.228	−0.033
COX2Cytochrome c oxidase subunit II	685 bp	32.7%	26.7%	13.6%	27.0%	40.58%	−0.331	+0.101
ATP8ATP synthase F0 subunit 8	210 bp	42.4%	21.9%	6.7%	29.0%	35.71%	−0.627	+0.319
ATP6ATP synthase F0 subunit 6	681 bp	31.6%	28.5%	9.4%	30.5%	39.94%	−0.529	+0.051
COX3Cytochrome c oxidase subunit III	784 bp	28.6%	27.9%	13.8%	29.7%	43.50%	−0.367	+0.011
ND3NADH dehydrogenase subunit 3	351 bp	30.5%	31.6%	11.4%	26.5%	37.89%	−0.399	−0.018
ND4LNADH dehydrogenase subunit 4L	297 bp	31.3%	30.6%	12.5%	25.6%	38.05%	−0.345	+0.011
ND4NADH dehydrogenase subunit 4	1,378 bp	32.2%	27.7%	9.7%	30.4%	40.06%	−0.518	+0.075
ND5NADH dehydrogenase subunit 5	1,812 bp	32.4%	25.8%	10.4%	31.4%	41.83%	−0.501	+0.114
ND6NADH dehydrogenase subunit 6	504 bp	44.8%	15.9%	7.5%	31.7%	39.29%	−0.616	+0.477
CYTBCytochrome b	1,146 bp	29.7%	25.8%	12.6%	31.9%	44.50%	−0.435	+0.069
12S rRNA12S ribosomal RNA	959 bp	35.2%	23.0%	18.2%	23.5%	41.71%	−0.125	+0.209
16S rRNA16S ribosomal RNA	1,558 bp	37.9%	23.9%	16.3%	22.0%	38.25%	−0.148	+0.227
D-loopControl region (D-loop)	1,538 bp	38.3%	29.8%	12.0%	19.8%	31.86%	−0.245	+0.124

Codon usage

Counts per codon, darker is more frequent

Gene

3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU75

UUC148

Leu L16.0%

UUA103

UUG24

CUU67

CUC118

CUA272

CUG23

Ile I9.5%

AUU159

AUC200

Met M5.6%

AUA174

AUG37

Val V4.6%

GUU38

GUC41

GUA80

GUG16

Ser S7.5%

UCU38

UCC77

UCA121

UCG3

AGU14

AGC33

Pro P5.3%

CCU38

CCC57

CCA106

CCG0

Thr T8.2%

ACU57

ACC95

ACA154

ACG7

Ala A6.8%

GCU63

GCC101

GCA86

GCG7

Tyr Y3.5%

UAU59

UAC75

His H2.9%

CAU44

CAC65

Gln Q2.3%

CAA86

CAG2

Asn N4.2%

AAU42

AAC116

Lys K2.5%

AAA92

AAG2

Asp D1.8%

GAU19

GAC48

Glu E2.4%

GAA77

GAG13

Cys C0.8%

UGU11

UGC19

Trp W2.7%

UGA99

UGG5

Arg R1.8%

CGU8

CGC14

CGA42

CGG3

Gly G5.6%

GGU46

GGC75

GGA72

GGG20

Stop 0.3%

UAA5

UAG4

AGA1

AGG0

Genome map

38 annotated features in NC_003322.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (39.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Vombatus ursinus (NC_003322.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	73	73 bp	+	–
12S rRNA	Ribosomal RNA	73	1,031	959 bp	+	41.7%
tRNA-Val	Transfer RNA	1,032	1,100	69 bp	+	–
16S rRNA	Ribosomal RNA	1,101	2,658	1,558 bp	+	38.3%
tRNA-Leu (UUR)	Transfer RNA	2,668	2,741	74 bp	+	–
ND1	Protein-coding gene	2,743	3,699	957 bp	+	40.2%
tRNA-Ile	Transfer RNA	3,700	3,765	66 bp	+	–
tRNA-Gln	Transfer RNA	3,764	3,835	72 bp	−	–
tRNA-Met	Transfer RNA	3,835	3,903	69 bp	+	–
ND2	Protein-coding gene	3,904	4,947	1,044 bp	+	39.5%
tRNA-Ala	Transfer RNA	4,949	5,017	69 bp	−	–
tRNA-Cys	Transfer RNA	5,027	5,091	65 bp	−	–
tRNA-Trp	Transfer RNA	5,096	5,165	70 bp	+	–
tRNA-Asn	Transfer RNA	5,247	5,318	72 bp	−	–
tRNA-Tyr	Transfer RNA	5,320	5,387	68 bp	−	–
COX1	Protein-coding gene	5,389	6,930	1,542 bp	+	41.5%
tRNA-Ser (UCN)	Transfer RNA	6,933	7,001	69 bp	−	–
tRNA-Asp	Transfer RNA	7,004	7,073	70 bp	+	–
COX2	Protein-coding gene	7,075	7,759	685 bp	+	40.6%
tRNA-Lys	Transfer RNA	7,760	7,815	56 bp	+	–
ATP8	Protein-coding gene	7,816	8,025	210 bp	+	35.7%
ATP6	Protein-coding gene	7,980	8,660	681 bp	+	39.9%
COX3	Protein-coding gene	8,660	9,443	784 bp	+	43.5%
tRNA-Gly	Transfer RNA	9,444	9,508	65 bp	+	–
ND3	Protein-coding gene	9,509	9,859	351 bp	+	37.9%
tRNA-Arg	Transfer RNA	9,858	9,926	69 bp	+	–
ND4L	Protein-coding gene	9,927	10,223	297 bp	+	38.1%
ND4	Protein-coding gene	10,217	11,594	1,378 bp	+	40.1%
tRNA-His	Transfer RNA	11,595	11,663	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,664	11,722	59 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,721	11,792	72 bp	+	–
ND5	Protein-coding gene	11,793	13,604	1,812 bp	+	41.8%
ND6	Protein-coding gene	13,601	14,104	504 bp	−	39.3%
tRNA-Glu	Transfer RNA	14,096	14,173	78 bp	−	–
CYTB	Protein-coding gene	14,176	15,321	1,146 bp	+	44.5%
tRNA-Thr	Transfer RNA	15,329	15,389	61 bp	+	–
tRNA-Pro	Transfer RNA	15,392	15,458	67 bp	−	–
D-loop	Control region	15,459	16,996	1,538 bp	–	31.9%