Xyrichtys novacula
Pearly razorfish
GC content
47.60%
Whole genome
Non-coding
1,569 bp
Including the D-loop
Where Pearly razorfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pearly razorfish has the 1,736th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome17,265 bp
- GC skew (G − C) / (G + C)
- −0.245
- AT skew (A − T) / (A + T)
- +0.029
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome17,265 bp
Protein-coding11,417 bp
12S rRNA949 bp
16S rRNA1,775 bp
All tRNA1,555 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 972 bp | 50.62% | −0.276 | −0.071 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.61% | −0.449 | +0.069 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.32% | −0.183 | −0.114 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.59% | −0.225 | +0.032 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.378 | −0.021 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.52% | −0.385 | −0.059 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.30% | −0.276 | −0.020 | |||||
| ND3NADH dehydrogenase subunit 3 | 352 bp | 52.56% | −0.211 | −0.222 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.338 | −0.158 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.29% | −0.360 | −0.049 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,845 bp | 47.26% | −0.323 | −0.034 | |||||
| ND6NADH dehydrogenase subunit 6 | 528 bp | 51.89% | −0.307 | +0.276 | |||||
| CYTBCytochrome b | 1,141 bp | 49.26% | −0.242 | −0.109 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 48.68% | −0.052 | +0.166 | |||||
| 16S rRNA16S ribosomal RNA | 1,775 bp | 47.32% | −0.140 | +0.213 |
Codon usage
Counts per codon, darker is more frequent3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU102
UUC141
Leu L17.0%
UUA67
UUG28
CUU137
CUC153
CUA181
CUG82
Ile I6.5%
AUU145
AUC101
Met M4.3%
AUA92
AUG72
Val V6.0%
GUU61
GUC64
GUA71
GUG31
Ser S6.8%
UCU42
UCC85
UCA46
UCG26
AGU12
AGC47
Pro P5.7%
CCU39
CCC114
CCA55
CCG10
Thr T7.7%
ACU44
ACC127
ACA108
ACG16
Ala A9.1%
GCU53
GCC176
GCA95
GCG24
Tyr Y3.1%
UAU38
UAC80
His H2.7%
CAU29
CAC74
Gln Q2.6%
CAA69
CAG29
Asn N2.9%
AAU40
AAC70
Lys K2.1%
AAA59
AAG20
Asp D2.0%
GAU21
GAC55
Glu E2.5%
GAA69
GAG27
Cys C0.8%
UGU11
UGC18
Trp W3.1%
UGA79
UGG38
Arg R2.1%
CGU6
CGC16
CGA43
CGG15
Gly G6.6%
GGU22
GGC73
GGA90
GGG66
Stop 0.2%
UAA5
UAG1
AGA1
AGG0
Genome map
37 annotated features in NC_083028.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,017 | 949 bp | + | 48.7% |
| tRNA-Val | Transfer RNA | 1,298 | 1,371 | 74 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,651 | 3,425 | 1,775 bp | + | 47.3% |
| tRNA-Leu (UUR) | Transfer RNA | 3,426 | 3,499 | 74 bp | + | – |
| ND1 | Protein-coding gene | 3,500 | 4,471 | 972 bp | + | 50.6% |
| tRNA-Ile | Transfer RNA | 4,476 | 4,547 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,547 | 4,617 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,617 | 4,685 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,686 | 5,730 | 1,045 bp | + | 48.6% |
| tRNA-Trp | Transfer RNA | 5,731 | 5,803 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,806 | 5,874 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,876 | 5,948 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,987 | 6,053 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 6,054 | 6,123 | 70 bp | − | – |
| COX1 | Protein-coding gene | 6,125 | 7,675 | 1,551 bp | + | 47.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,676 | 7,746 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,750 | 7,818 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,826 | 8,516 | 691 bp | + | 45.6% |
| tRNA-Lys | Transfer RNA | 8,517 | 8,591 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 8,593 | 8,760 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,751 | 9,434 | 684 bp | + | 47.5% |
| COX3 | Protein-coding gene | 9,434 | 10,218 | 785 bp | + | 49.3% |
| tRNA-Gly | Transfer RNA | 10,219 | 10,289 | 71 bp | + | – |
| ND3 | Protein-coding gene | 10,290 | 10,641 | 352 bp | + | 52.6% |
| tRNA-Arg | Transfer RNA | 10,642 | 10,710 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,711 | 11,007 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 11,001 | 12,381 | 1,381 bp | + | 47.3% |
| tRNA-His | Transfer RNA | 12,382 | 12,450 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,451 | 12,519 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,524 | 12,596 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,600 | 14,444 | 1,845 bp | + | 47.3% |
| ND6 | Protein-coding gene | 14,440 | 14,967 | 528 bp | − | 51.9% |
| tRNA-Glu | Transfer RNA | 14,968 | 15,038 | 71 bp | − | – |
| CYTB | Protein-coding gene | 15,066 | 16,206 | 1,141 bp | + | 49.3% |
| tRNA-Thr | Transfer RNA | 16,207 | 16,277 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 16,277 | 16,346 | 70 bp | − | – |