Yasuhikotakia modesta
Redtail botia
GC content
41.87%
Whole genome
Non-coding
1,001 bp
Including the D-loop
Where Redtail botia sits among 2,335 species
Whole-genome GC content against maximum lifespan. Redtail botia has the 1,765th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,588 bp
- GC skew (G − C) / (G + C)
- −0.263
- AT skew (A − T) / (A + T)
- +0.110
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in captivity
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,588 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,673 bp
All tRNA1,560 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 41.03% | −0.300 | +0.096 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 41.91% | −0.447 | +0.183 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.01% | −0.178 | −0.061 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.68% | −0.250 | +0.062 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 36.91% | −0.387 | +0.132 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.23% | −0.326 | +0.045 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.19% | −0.245 | −0.009 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 39.83% | −0.338 | 0.000 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.324 | 0.000 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 40.81% | −0.348 | +0.088 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.03% | −0.402 | +0.118 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 40.61% | −0.443 | +0.439 | |||||
| CYTBCytochrome b | 1,141 bp | 41.72% | −0.328 | +0.035 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 46.99% | −0.056 | +0.195 | |||||
| 16S rRNA16S ribosomal RNA | 1,673 bp | 42.20% | −0.082 | +0.295 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU89
UUC134
Leu L16.3%
UUA142
UUG23
CUU77
CUC80
CUA267
CUG33
Ile I7.7%
AUU180
AUC114
Met M4.8%
AUA146
AUG37
Val V5.8%
GUU56
GUC38
GUA110
GUG16
Ser S6.1%
UCU38
UCC52
UCA84
UCG5
AGU20
AGC32
Pro P5.7%
CCU28
CCC55
CCA127
CCG8
Thr T8.1%
ACU50
ACC93
ACA160
ACG4
Ala A8.8%
GCU60
GCC138
GCA132
GCG6
Tyr Y3.0%
UAU67
UAC46
His H2.9%
CAU34
CAC76
Gln Q2.5%
CAA90
CAG6
Asn N3.2%
AAU43
AAC77
Lys K2.1%
AAA76
AAG3
Asp D2.1%
GAU29
GAC50
Glu E2.6%
GAA88
GAG11
Cys C0.7%
UGU8
UGC19
Trp W3.2%
UGA105
UGG16
Arg R2.0%
CGU7
CGC11
CGA53
CGG5
Gly G6.5%
GGU28
GGC65
GGA120
GGG33
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
37 annotated features in NC_035145.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 67 | 135 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 136 | 1,082 | 947 bp | + | 47.0% |
| tRNA-Val | Transfer RNA | 1,086 | 1,157 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,158 | 2,830 | 1,673 bp | + | 42.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,831 | 2,905 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,907 | 3,881 | 975 bp | + | 41.0% |
| tRNA-Ile | Transfer RNA | 3,883 | 3,954 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,953 | 4,023 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,025 | 4,094 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,095 | 5,139 | 1,045 bp | + | 41.9% |
| tRNA-Trp | Transfer RNA | 5,140 | 5,209 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,219 | 5,287 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,289 | 5,361 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,393 | 5,458 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,459 | 5,530 | 72 bp | − | – |
| COX1 | Protein-coding gene | 5,532 | 7,082 | 1,551 bp | + | 43.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,083 | 7,153 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,156 | 7,228 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,243 | 7,933 | 691 bp | + | 41.7% |
| tRNA-Lys | Transfer RNA | 7,934 | 8,009 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 8,011 | 8,178 | 168 bp | + | 36.9% |
| ATP6 | Protein-coding gene | 8,169 | 8,852 | 684 bp | + | 41.2% |
| COX3 | Protein-coding gene | 8,852 | 9,636 | 785 bp | + | 43.2% |
| tRNA-Gly | Transfer RNA | 9,637 | 9,708 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,709 | 10,057 | 349 bp | + | 39.8% |
| tRNA-Arg | Transfer RNA | 10,058 | 10,127 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,128 | 10,424 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,418 | 11,799 | 1,382 bp | + | 40.8% |
| tRNA-His | Transfer RNA | 11,800 | 11,869 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,870 | 11,937 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,939 | 12,011 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,012 | 13,850 | 1,839 bp | + | 42.0% |
| ND6 | Protein-coding gene | 13,847 | 14,368 | 522 bp | − | 40.6% |
| tRNA-Glu | Transfer RNA | 14,369 | 14,437 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,443 | 15,583 | 1,141 bp | + | 41.7% |
| tRNA-Thr | Transfer RNA | 15,584 | 15,656 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,655 | 15,724 | 70 bp | − | – |