MitoAge

Zalophus californianus

California sea lion

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Maximum lifespan
35.7 yr
AnAge record
mtDNA size
16,677 bp
RefSeq NC_008416.1
GC content
40.39%
Whole genome
Non-coding
1,278 bp
D-loop 1,216 bp

Where California sea lion sits among 2,335 species

Whole-genome GC content against maximum lifespan. California sea lion has the 322nd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %California sea lion
  • This species
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,677 bp
GC skew (G − C) / (G + C)
−0.319
AT skew (A − T) / (A + T)
+0.127

Life history

Maximum lifespan
35.7 years
Adult weight
180 kg
Birth weight
7 kg
Body temperature
38.1 °C
Female sexual maturity
3 years
Male sexual maturity
5 years
Gestation or incubation
259 days
Litter or clutch size
1.2
Litters per year
0.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02219)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,677 bp
Protein-coding11,345 bp
12S rRNA962 bp
16S rRNA1,579 bp
All tRNA1,519 bp
D-loop1,216 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp30.9%26.6%12.5%29.9%42.42%−0.409+0.074
ND2NADH dehydrogenase subunit 21,044 bp37.5%25.4%9.0%28.1%37.07%−0.514+0.193
COX1Cytochrome c oxidase subunit I1,545 bp27.7%29.1%17.5%25.7%43.17%−0.190−0.025
COX2Cytochrome c oxidase subunit II682 bp33.9%27.7%13.6%24.8%38.42%−0.290+0.100
ATP8ATP synthase F0 subunit 8204 bp40.2%26.5%6.9%26.5%33.33%−0.588+0.206
ATP6ATP synthase F0 subunit 6681 bp31.1%27.6%11.0%30.2%41.26%−0.466+0.060
COX3Cytochrome c oxidase subunit III784 bp28.4%27.0%14.7%29.8%44.52%−0.341+0.025
ND3NADH dehydrogenase subunit 3346 bp32.4%26.6%11.8%29.2%41.04%−0.423+0.098
ND4LNADH dehydrogenase subunit 4L297 bp30.0%29.6%12.1%28.3%40.40%−0.400+0.006
ND4NADH dehydrogenase subunit 41,378 bp33.2%26.8%11.0%29.1%40.06%−0.453+0.107
ND5NADH dehydrogenase subunit 51,827 bp33.3%26.2%12.0%28.5%40.45%−0.407+0.119
ND6NADH dehydrogenase subunit 6528 bp42.0%18.6%10.6%28.8%39.39%−0.462+0.388
CYTBCytochrome b1,140 bp30.8%26.1%13.2%30.0%43.16%−0.390+0.083
12S rRNA12S ribosomal RNA962 bp36.7%22.3%17.5%23.5%40.96%−0.147+0.243
16S rRNA16S ribosomal RNA1,579 bp38.5%23.5%17.2%20.8%38.00%−0.093+0.242
D-loopControl region (D-loop)1,216 bp33.3%26.6%14.0%26.1%40.05%−0.302+0.111

Codon usage

Counts per codon, darker is more frequent

3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU81
UUC146
Leu L15.9%
UUA93
UUG15
CUU61
CUC82
CUA315
CUG39
Ile I8.5%
AUU143
AUC180
Met M6.7%
AUA200
AUG53
Val V4.7%
GUU25
GUC32
GUA101
GUG21
Ser S7.5%
UCU41
UCC66
UCA110
UCG12
AGU17
AGC39
Pro P5.3%
CCU44
CCC77
CCA77
CCG2
Thr T8.8%
ACU60
ACC110
ACA147
ACG16
Ala A6.6%
GCU51
GCC97
GCA85
GCG17
Tyr Y3.3%
UAU61
UAC64
His H2.7%
CAU35
CAC67
Gln Q2.2%
CAA78
CAG7
Asn N4.0%
AAU62
AAC89
Lys K2.6%
AAA88
AAG11
Asp D1.8%
GAU19
GAC51
Glu E2.6%
GAA76
GAG22
Cys C0.6%
UGU3
UGC21
Trp W2.7%
UGA93
UGG10
Arg R1.7%
CGU8
CGC8
CGA44
CGG4
Gly G5.7%
GGU34
GGC54
GGA112
GGG18
Stop 0.2%
UAA6
UAG2
AGA1
AGG0

Genome map

38 annotated features in NC_008416.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17272 bp+–
12S rRNARibosomal RNA731,034962 bp+41.0%
tRNA-ValTransfer RNA1,0351,10167 bp+–
16S rRNARibosomal RNA1,1022,6801,579 bp+38.0%
tRNA-Leu (UUR)Transfer RNA2,6812,75676 bp+–
ND1Protein-coding gene2,7593,715957 bp+42.4%
tRNA-IleTransfer RNA3,7153,78470 bp+–
tRNA-GlnTransfer RNA3,7823,85574 bp−–
tRNA-MetTransfer RNA3,8573,92569 bp+–
ND2Protein-coding gene3,9264,9691,044 bp+37.1%
tRNA-TrpTransfer RNA4,9685,03568 bp+–
tRNA-AlaTransfer RNA5,0465,11469 bp−–
tRNA-AsnTransfer RNA5,1165,18873 bp−–
tRNA-CysTransfer RNA5,2215,28868 bp−–
tRNA-TyrTransfer RNA5,2895,35668 bp−–
COX1Protein-coding gene5,3586,9021,545 bp+43.2%
tRNA-Ser (UCN)Transfer RNA6,9006,96869 bp−–
tRNA-AspTransfer RNA6,9757,04167 bp+–
COX2Protein-coding gene7,0427,723682 bp+38.4%
tRNA-LysTransfer RNA7,7277,79569 bp+–
ATP8Protein-coding gene7,7978,000204 bp+33.3%
ATP6Protein-coding gene7,9588,638681 bp+41.3%
COX3Protein-coding gene8,6389,421784 bp+44.5%
tRNA-GlyTransfer RNA9,4229,49170 bp+–
ND3Protein-coding gene9,4929,837346 bp+41.0%
tRNA-ArgTransfer RNA9,8399,90769 bp+–
ND4LProtein-coding gene9,90810,204297 bp+40.4%
ND4Protein-coding gene10,19811,5751,378 bp+40.1%
tRNA-HisTransfer RNA11,57611,66994 bp+–
tRNA-Ser (AGY)Transfer RNA11,64511,70359 bp+–
tRNA-Leu (CUN)Transfer RNA11,70411,77370 bp+–
ND5Protein-coding gene11,77413,6001,827 bp+40.5%
ND6Protein-coding gene13,58414,111528 bp−39.4%
tRNA-GluTransfer RNA14,11214,18069 bp−–
CYTBProtein-coding gene14,18515,3241,140 bp+43.2%
tRNA-ThrTransfer RNA15,32515,39672 bp+–
tRNA-ProTransfer RNA15,39615,46166 bp−–
D-loopControl region15,46216,6771,216 bp–40.1%

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