family · mtDNA statistics

Callitrichidae

6 species in 5 genera. Every region of their mitochondrial genomes, side by side.

Group

species

39.4%

mean GC, whole genome

SD 1.3, range 37.5–40.6%

16,522

median genome length, bp

Range 16,499–16,872 bp

genera

Regions

GC content of each region across Callitrichidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	6	39.43%	1.33	0.034	37.50%Leontopithecus rosalia	39.99%	40.57%Saguinus oedipus	−0.52	0.29
Protein-coding	6	39.52%	1.67	0.042	37.14%Leontopithecus rosalia	40.27%	40.92%Saguinus oedipus	−0.53	0.28
All rRNA	6	40.54%	0.81	0.020	39.28%Leontopithecus rosalia	40.61%	41.57%Saguinus oedipus	−0.40	0.44
All tRNA	6	35.70%	0.47	0.013	34.82%Leontopithecus rosalia	35.86%	36.09%Callithrix jacchus	−0.80	0.05
12S rRNA	6	43.02%	0.86	0.020	41.80%Leontopithecus rosalia	43.11%	44.08%Saguinus oedipus	−0.35	0.5
16S rRNA	6	39.03%	0.79	0.020	37.75%Leontopithecus rosalia	39.08%	40.04%Saguinus oedipus	−0.42	0.41
D-loop	2	40.34%	0.74	0.018	39.82%Callimico goeldii	40.34%	40.87%Callithrix jacchus	–	–
ND1	6	40.56%	1.38	0.034	38.95%Callimico goeldii	40.74%	42.26%Callithrix geoffroyi	−0.50	0.31
ND2	6	36.83%	2.29	0.062	33.98%Callimico goeldii	37.64%	39.17%Callithrix geoffroyi	−0.64	0.18
COX1	6	41.34%	1.51	0.036	39.18%Callimico goeldii	42.14%	42.47%Callithrix geoffroyi	−0.52	0.29
COX2	6	39.56%	1.79	0.045	36.92%Leontopithecus rosalia	40.55%	40.84%Callithrix geoffroyi	−0.59	0.22
ATP8	6	31.22%	2.64	0.085	26.09%Leontopithecus rosalia	31.86%	33.33%Callithrix jacchus	−0.75	0.09
ATP6	6	38.55%	2.13	0.055	35.10%Leontopithecus rosalia	39.35%	40.68%Saguinus oedipus	−0.51	0.3
COX3	6	43.41%	1.61	0.037	41.84%Callimico goeldii	42.92%	45.92%Saguinus oedipus	−0.14	0.8
ND3	6	39.11%	2.62	0.067	35.55%Leontopithecus rosalia	40.32%	41.91%Saguinus oedipus	−0.44	0.38
ND4L	6	34.18%	2.31	0.068	30.64%Leontopithecus rosalia	35.19%	36.03%Callithrix geoffroyi	−0.59	0.22
ND4	6	38.07%	2.08	0.055	34.98%Leontopithecus rosalia	38.18%	40.80%Saguinus oedipus	−0.30	0.56
ND5	6	38.58%	1.30	0.034	36.32%Leontopithecus rosalia	39.20%	39.59%Callithrix geoffroyi	−0.68	0.14
ND6	6	38.23%	1.53	0.040	36.33%Callimico goeldii	38.48%	40.07%Callithrix geoffroyi	−0.62	0.19
CYTB	6	42.92%	2.25	0.052	39.91%Callimico goeldii	43.51%	45.00%Callithrix geoffroyi	−0.39	0.45

Genera of Callitrichidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Callitrichidae

Callithrix	2	40.39%	0.11	0.003	40.31%Callithrix jacchus	40.39%	40.47%Callithrix geoffroyi	–	–
Callimico	1	38.04%	–	–	38.04%Callimico goeldii	38.04%	38.04%Callimico goeldii	–	–
Cebuella	1	39.68%	–	–	39.68%Cebuella pygmaea	39.68%	39.68%Cebuella pygmaea	–	–
Leontopithecus	1	37.50%	–	–	37.50%Leontopithecus rosalia	37.50%	37.50%Leontopithecus rosalia	–	–
Saguinus	1	40.57%	–	–	40.57%Saguinus oedipus	40.57%	40.57%Saguinus oedipus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Callitrichidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Callitrichidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.