family · mtDNA statistics

Nemipteridae

4 species in 1 genus. Every region of their mitochondrial genomes, side by side.

Group

species

43.0%

mean GC, whole genome

SD 0.3, range 42.7–43.4%

16,994

median genome length, bp

Range 16,642–17,353 bp

genus

Regions

GC content of each region across Nemipteridae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	43.03%	0.28	0.006	42.67%Nemipterus bathybius	43.05%	43.35%Nemipterus randalli	–	–
Protein-coding	4	43.98%	0.31	0.007	43.79%Nemipterus japonicus	43.84%	44.45%Nemipterus bathybius	–	–
All rRNA	4	44.65%	0.37	0.008	44.11%Nemipterus bathybius	44.78%	44.91%Nemipterus japonicus	–	–
All tRNA	4	43.12%	0.33	0.008	42.71%Nemipterus bathybius	43.18%	43.38%Nemipterus japonicus	–	–
12S rRNA	4	48.57%	0.68	0.014	47.64%Nemipterus bathybius	48.78%	49.09%Nemipterus japonicus	–	–
16S rRNA	4	42.43%	0.23	0.005	42.09%Nemipterus bathybius	42.50%	42.62%Nemipterus japonicus	–	–
D-loop	4	30.76%	2.50	0.081	27.01%Nemipterus bathybius	31.99%	32.06%Nemipterus virgatus	–	–
ND1	4	44.28%	0.55	0.012	43.59%Nemipterus randalli	44.41%	44.72%Nemipterus japonicus	–	–
ND2	4	44.07%	0.78	0.018	43.47%Nemipterus japonicus	43.83%	45.12%Nemipterus bathybius	–	–
COX1	4	43.63%	0.08	0.002	43.52%Nemipterus randalli	43.65%	43.71%Nemipterus bathybius	–	–
COX2	4	42.58%	0.27	0.006	42.40%Nemipterus japonicus	42.47%	42.98%Nemipterus bathybius	–	–
ATP8	4	43.45%	1.75	0.040	41.67%Nemipterus randalli	43.45%	45.24%Nemipterus virgatus	–	–
ATP6	4	44.24%	1.46	0.033	42.98%Nemipterus randalli	43.82%	46.35%Nemipterus bathybius	–	–
COX3	4	46.05%	0.34	0.007	45.73%Nemipterus virgatus	45.99%	46.50%Nemipterus randalli	–	–
ND3	4	44.63%	1.08	0.024	43.84%Nemipterus japonicus	44.27%	46.13%Nemipterus bathybius	–	–
ND4L	4	48.65%	1.39	0.029	46.80%Nemipterus randalli	48.82%	50.17%Nemipterus bathybius	–	–
ND4	4	43.82%	0.24	0.005	43.61%Nemipterus japonicus	43.82%	44.03%Nemipterus bathybius	–	–
ND5	4	42.13%	0.80	0.019	41.44%Nemipterus japonicus	42.12%	42.85%Nemipterus randalli	–	–
ND6	4	43.44%	0.29	0.007	43.10%Nemipterus randalli	43.49%	43.68%Nemipterus japonicus	–	–
CYTB	4	45.07%	0.33	0.007	44.61%Nemipterus randalli	45.14%	45.40%Nemipterus bathybius	–	–

Genera of Nemipteridae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Nemipteridae

Nemipterus	4	43.03%	0.28	0.006	42.67%Nemipterus bathybius	43.05%	43.35%Nemipterus randalli	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Nemipteridae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Nemipteridae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.