order · mtDNA statistics

Carangiformes

22 species in 2 families. Every region of their mitochondrial genomes, side by side.

Group

species

46.0%

mean GC, whole genome

SD 1.6, range 41.1–48.0%

16,559

median genome length, bp

Range 16,502–16,659 bp

families

Regions

GC content of each region across Carangiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	22	46.04%	1.55	0.034	41.13%Coryphaena equiselis	46.36%	47.99%Seriola lalandi	0.22	0.32
Protein-coding	22	46.72%	1.62	0.035	42.63%Coryphaena equiselis	47.03%	48.93%Seriola lalandi	0.21	0.34
All rRNA	22	46.65%	1.29	0.028	42.10%Coryphaena equiselis	46.65%	48.54%Seriola lalandi	0.14	0.53
All tRNA	22	45.43%	0.85	0.019	43.12%Coryphaena equiselis	45.35%	46.93%Seriola dumerili	0.06	0.8
12S rRNA	22	48.15%	1.18	0.025	44.08%Coryphaena equiselis	48.56%	49.37%Naucrates ductor	0.04	0.87
16S rRNA	22	45.82%	1.44	0.031	41.01%Coryphaena equiselis	45.77%	48.11%Seriola lalandi	0.18	0.42
D-loop	17	32.62%	12.32	0.378	0.00%Coryphaena equiselis	36.91%	38.60%Seriola dumerili	0.44	0.07
ND1	22	48.94%	1.93	0.039	44.34%Coryphaena equiselis	49.54%	51.90%Seriola lalandi	0.20	0.36
ND2	22	47.88%	2.20	0.046	42.58%Coryphaena equiselis	47.99%	51.34%Seriola lalandi	0.26	0.25
COX1	22	45.31%	1.62	0.036	42.08%Coryphaena equiselis	45.39%	47.97%Seriola dumerili	0.03	0.88
COX2	22	43.32%	1.28	0.029	40.96%Coryphaena equiselis	43.56%	46.02%Decapterus maruadsi	0.10	0.67
ATP8	22	46.31%	2.79	0.060	36.90%Coryphaena equiselis	46.55%	51.52%Selar crumenophthalmus	0.42	0.05
ATP6	22	45.50%	2.20	0.048	40.64%Coryphaena equiselis	45.18%	49.27%Pseudocaranx dentex	0.21	0.36
COX3	22	48.46%	1.66	0.034	42.29%Coryphaena equiselis	48.92%	50.00%Trachurus japonicus	0.25	0.26
ND3	22	47.04%	2.42	0.051	42.69%Coryphaena equiselis	47.29%	50.72%Seriola dumerili	−0.01	0.95
ND4L	22	50.60%	1.31	0.026	47.14%Coryphaena equiselis	50.51%	53.54%Pseudocaranx dentex	0.24	0.28
ND4	22	46.82%	1.91	0.041	42.94%Coryphaena equiselis	47.25%	49.31%Seriola lalandi	0.31	0.16
ND5	22	45.56%	1.66	0.037	41.71%Coryphaena equiselis	46.30%	47.63%Seriola lalandi	0.26	0.25
ND6	22	46.65%	3.04	0.065	41.57%Gnathanodon speciosus	46.07%	51.92%Naucrates ductor	−0.07	0.77
CYTB	22	47.62%	1.42	0.030	44.35%Coryphaena equiselis	47.63%	50.31%Seriola lalandi	0.22	0.33

Families of Carangiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Carangiformes

Carangidae	21	46.27%	1.12	0.024	44.23%Gnathanodon speciosus	46.47%	47.99%Seriola lalandi	0.07	0.76
Coryphaenidae	1	41.13%	–	–	41.13%Coryphaena equiselis	41.13%	41.13%Coryphaena equiselis	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Carangiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Carangiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.