family · mtDNA statistics

Carangidae

21 species in 12 genera. Every region of their mitochondrial genomes, side by side.

Group

species

46.3%

mean GC, whole genome

SD 1.1, range 44.2–48.0%

16,559

median genome length, bp

Range 16,502–16,610 bp

genera

Regions

GC content of each region across Carangidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	21	46.27%	1.12	0.024	44.23%Gnathanodon speciosus	46.47%	47.99%Seriola lalandi	0.07	0.76
Protein-coding	21	46.91%	1.37	0.029	44.32%Gnathanodon speciosus	47.22%	48.93%Seriola lalandi	0.09	0.69
All rRNA	21	46.87%	0.81	0.017	45.43%Trachinotus carolinus	46.67%	48.54%Seriola lalandi	−0.09	0.71
All tRNA	21	45.54%	0.69	0.015	44.61%Trachinotus ovatus	45.37%	46.93%Seriola dumerili	−0.12	0.61
12S rRNA	21	48.34%	0.78	0.016	46.84%Trachinotus carolinus	48.58%	49.37%Naucrates ductor	−0.24	0.29
16S rRNA	21	46.05%	0.98	0.021	44.66%Trachinotus carolinus	45.82%	48.11%Seriola lalandi	−0.00	0.99
D-loop	16	34.66%	9.31	0.268	0.00%Selene vomer	37.05%	38.60%Seriola dumerili	0.29	0.28
ND1	21	49.15%	1.68	0.034	45.95%Elagatis bipinnulata	49.54%	51.90%Seriola lalandi	0.09	0.7
ND2	21	48.13%	1.90	0.039	44.40%Gnathanodon speciosus	48.23%	51.34%Seriola lalandi	0.15	0.51
COX1	21	45.46%	1.49	0.033	42.65%Gnathanodon speciosus	45.39%	47.97%Seriola dumerili	−0.09	0.71
COX2	21	43.44%	1.19	0.027	41.39%Gnathanodon speciosus	43.56%	46.02%Decapterus maruadsi	−0.01	0.98
ATP8	21	46.76%	1.88	0.040	43.45%Trachinotus ovatus	46.67%	51.52%Selar crumenophthalmus	0.37	0.1
ATP6	21	45.73%	1.96	0.043	42.77%Caranx ignobilis	45.32%	49.27%Pseudocaranx dentex	0.10	0.66
COX3	21	48.75%	0.95	0.020	46.62%Caranx tille	48.92%	50.00%Trachurus japonicus	0.09	0.69
ND3	21	47.25%	2.27	0.048	42.98%Caranx melampygus	47.29%	50.72%Seriola dumerili	−0.13	0.59
ND4L	21	50.76%	1.09	0.021	49.49%Trachurus trachurus	50.84%	53.54%Pseudocaranx dentex	0.12	0.59
ND4	21	47.01%	1.75	0.037	43.95%Caranx tille	47.65%	49.31%Seriola lalandi	0.23	0.32
ND5	21	45.75%	1.46	0.032	43.09%Trachinotus ovatus	46.38%	47.63%Seriola lalandi	0.15	0.5
ND6	21	46.80%	3.03	0.065	41.57%Gnathanodon speciosus	46.17%	51.92%Naucrates ductor	−0.13	0.57
CYTB	21	47.78%	1.24	0.026	46.01%Selar crumenophthalmus	47.77%	50.31%Seriola lalandi	0.11	0.64

Genera of Carangidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Carangidae

Caranx	4	45.20%	0.54	0.012	44.77%Caranx melampygus	45.07%	45.90%Caranx crysos	–	–
Trachurus	3	46.52%	0.04	0.001	46.47%Trachurus japonicus	46.52%	46.56%Trachurus symmetricus	–	–
Seriola	3	47.69%	0.29	0.006	47.41%Seriola zonata	47.66%	47.99%Seriola lalandi	–	–
Decapterus	2	47.26%	0.29	0.006	47.05%Decapterus maruadsi	47.26%	47.47%Decapterus macarellus	–	–
Trachinotus	2	45.03%	0.41	0.009	44.74%Trachinotus ovatus	45.03%	45.32%Trachinotus carolinus	–	–
Selar	1	46.25%	–	–	46.25%Selar crumenophthalmus	46.25%	46.25%Selar crumenophthalmus	–	–
Elagatis	1	46.26%	–	–	46.26%Elagatis bipinnulata	46.26%	46.26%Elagatis bipinnulata	–	–
Selene	1	46.65%	–	–	46.65%Selene vomer	46.65%	46.65%Selene vomer	–	–
Megalaspis	1	45.36%	–	–	45.36%Megalaspis cordyla	45.36%	45.36%Megalaspis cordyla	–	–
Gnathanodon	1	44.23%	–	–	44.23%Gnathanodon speciosus	44.23%	44.23%Gnathanodon speciosus	–	–
Pseudocaranx	1	47.39%	–	–	47.39%Pseudocaranx dentex	47.39%	47.39%Pseudocaranx dentex	–	–
Naucrates	1	47.59%	–	–	47.59%Naucrates ductor	47.59%	47.59%Naucrates ductor	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Carangidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Carangidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.