order · mtDNA statistics

Gadiformes

20 species in 5 families. Every region of their mitochondrial genomes, side by side.

Group

species

43.7%

mean GC, whole genome

SD 2.0, range 41.0–48.3%

16,572

median genome length, bp

Range 15,564–17,078 bp

families

Regions

GC content of each region across Gadiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	20	43.74%	2.03	0.046	41.01%Melanogrammus aeglefinus	43.07%	48.32%Merluccius merluccius	−0.12	0.6
Protein-coding	20	43.74%	2.65	0.061	39.89%Melanogrammus aeglefinus	42.92%	49.41%Merluccius merluccius	−0.10	0.67
All rRNA	20	44.57%	0.78	0.017	43.39%Coelorinchus caelorhincus	44.47%	46.38%Merluccius hubbsi	−0.32	0.18
All tRNA	20	45.66%	1.05	0.023	42.95%Antimora microlepis	45.74%	47.34%Merluccius productus	−0.45	0.04
12S rRNA	20	46.22%	1.13	0.024	45.16%Merlangius merlangus	45.72%	48.83%Merluccius hubbsi	−0.12	0.61
16S rRNA	20	43.63%	0.83	0.019	41.50%Coelorinchus caelorhincus	43.73%	44.99%Merluccius hubbsi	−0.37	0.11
D-loop	15	34.48%	9.77	0.283	0.00%Merluccius hubbsi	36.34%	43.75%Merlangius merlangus	0.61	0.02
ND1	20	44.64%	2.12	0.047	41.03%Melanogrammus aeglefinus	44.72%	49.64%Merluccius merluccius	−0.08	0.74
ND2	20	43.27%	3.32	0.077	38.95%Merlangius merlangus	42.20%	49.67%Merluccius merluccius	−0.12	0.6
COX1	20	44.41%	2.54	0.057	40.94%Melanogrammus aeglefinus	43.53%	49.97%Merluccius merluccius	−0.10	0.68
COX2	20	42.03%	2.42	0.058	39.36%Boreogadus saida	40.81%	47.03%Merluccius merluccius	−0.01	0.96
ATP8	20	41.49%	2.85	0.069	33.33%Coelorinchus caelorhincus	41.96%	45.24%Merluccius merluccius	−0.21	0.39
ATP6	20	42.17%	3.87	0.092	37.34%Merlangius merlangus	41.16%	49.49%Merluccius productus	0.02	0.93
COX3	20	45.23%	2.78	0.061	41.09%Melanogrammus aeglefinus	44.11%	51.02%Merluccius merluccius	−0.03	0.89
ND3	20	44.01%	3.21	0.073	36.96%Antimora microlepis	44.56%	49.57%Merluccius merluccius	−0.13	0.59
ND4L	20	46.73%	1.77	0.038	42.09%Melanogrammus aeglefinus	46.80%	50.17%Molva dypterygia	0.03	0.91
ND4	20	43.50%	3.38	0.078	37.95%Melanogrammus aeglefinus	42.50%	50.18%Merluccius merluccius	−0.01	0.96
ND5	20	42.87%	2.87	0.067	39.42%Melanogrammus aeglefinus	41.82%	49.81%Merluccius merluccius	−0.16	0.5
ND6	20	45.88%	1.89	0.041	43.10%Antimora microlepis	45.69%	49.62%Micromesistius poutassou	−0.16	0.51
CYTB	20	43.32%	2.75	0.064	39.18%Melanogrammus aeglefinus	42.64%	48.99%Merluccius hubbsi	−0.24	0.31

Families of Gadiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Gadiformes

Gadidae	12	42.83%	1.23	0.029	41.01%Melanogrammus aeglefinus	42.83%	45.47%Micromesistius poutassou	−0.02	0.95
Merlucciidae	3	47.46%	0.75	0.016	46.93%Merluccius hubbsi	47.12%	48.32%Merluccius merluccius	–	–
Lotidae	2	45.01%	0.01	0.000	45.00%Molva dypterygia	45.01%	45.01%Brosme brosme	–	–
Macrouridae	2	43.46%	0.95	0.022	42.79%Coelorinchus caelorhincus	43.46%	44.12%Albatrossia pectoralis	–	–
Moridae	1	41.57%	–	–	41.57%Antimora microlepis	41.57%	41.57%Antimora microlepis	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Gadiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Gadiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.