Aetobatus flagellum

Longheaded eagle ray

Maximum lifespan

16 yr

AnAge record

mtDNA size

20,201 bp

RefSeq NC_022837.1

GC content

40.87%

Whole genome

Non-coding

4,714 bp

D-loop 4,490 bp

Where Longheaded eagle ray sits among 2,335 species

Whole-genome GC content against maximum lifespan. Longheaded eagle ray has the 1,154th longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome20,201 bp

GC skew (G − C) / (G + C): −0.325
AT skew (A − T) / (A + T): +0.047

Life history

Maximum lifespan: 16 years
Adult weight: 7.6 kg
Female sexual maturity: 6 years
Litter or clutch size: 3.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01808)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome20,201 bp

Protein-coding11,408 bp

12S rRNA952 bp

16S rRNA1,571 bp

All tRNA1,556 bp

D-loop4,490 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Aetobatus flagellum genes

ND1NADH dehydrogenase subunit 1	975 bp	28.5%	27.1%	12.2%	32.2%	44.41%	−0.450	+0.026
ND2NADH dehydrogenase subunit 2	1,047 bp	32.9%	25.8%	9.6%	31.7%	41.36%	−0.533	+0.121
COX1Cytochrome c oxidase subunit I	1,554 bp	26.3%	30.8%	17.3%	25.7%	42.99%	−0.195	−0.079
COX2Cytochrome c oxidase subunit II	691 bp	31.0%	28.9%	14.3%	25.8%	40.09%	−0.285	+0.034
ATP8ATP synthase F0 subunit 8	168 bp	32.7%	30.4%	8.9%	28.0%	36.91%	−0.516	+0.038
ATP6ATP synthase F0 subunit 6	684 bp	28.7%	30.1%	10.8%	30.4%	41.23%	−0.475	−0.025
COX3Cytochrome c oxidase subunit III	786 bp	26.7%	27.6%	15.8%	29.9%	45.67%	−0.309	−0.016
ND3NADH dehydrogenase subunit 3	349 bp	24.1%	30.9%	13.8%	31.2%	44.99%	−0.389	−0.125
ND4LNADH dehydrogenase subunit 4L	297 bp	23.6%	34.7%	13.1%	28.6%	41.75%	−0.371	−0.191
ND4NADH dehydrogenase subunit 4	1,381 bp	29.0%	28.2%	11.4%	31.3%	42.72%	−0.464	+0.014
ND5NADH dehydrogenase subunit 5	1,833 bp	30.3%	29.2%	11.1%	29.5%	40.54%	−0.454	+0.018
ND6NADH dehydrogenase subunit 6	522 bp	40.2%	15.9%	10.0%	33.9%	43.87%	−0.546	+0.433
CYTBCytochrome b	1,143 bp	27.7%	28.4%	11.7%	32.1%	43.83%	−0.465	−0.012
12S rRNA12S ribosomal RNA	952 bp	32.6%	23.9%	18.6%	24.9%	43.49%	−0.145	+0.152
16S rRNA16S ribosomal RNA	1,571 bp	35.6%	24.2%	17.8%	22.4%	40.17%	−0.116	+0.191
D-loopControl region (D-loop)	4,490 bp	32.0%	30.6%	13.7%	23.7%	37.42%	−0.267	+0.022

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU112

UUC124

Leu L17.1%

UUA108

UUG29

CUU119

CUC126

CUA229

CUG39

Ile I8.7%

AUU170

AUC160

Met M4.6%

AUA139

AUG38

Val V4.6%

GUU54

GUC53

GUA59

GUG11

Ser S7.2%

UCU55

UCC73

UCA82

UCG8

AGU16

AGC39

Pro P5.7%

CCU48

CCC61

CCA100

CCG10

Thr T8.1%

ACU51

ACC122

ACA127

ACG9

Ala A7.6%

GCU62

GCC132

GCA89

GCG5

Tyr Y3.0%

UAU49

UAC66

His H2.7%

CAU38

CAC63

Gln Q2.7%

CAA93

CAG9

Asn N3.8%

AAU55

AAC88

Lys K2.0%

AAA76

AAG2

Asp D1.8%

GAU24

GAC45

Glu E2.5%

GAA84

GAG10

Cys C0.7%

UGU12

UGC13

Trp W3.2%

UGA113

UGG7

Arg R1.9%

CGU8

CGC22

CGA35

CGG6

Gly G5.8%

GGU50

GGC71

GGA68

GGG33

Stop 0.3%

UAA9

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_022837.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (40.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Aetobatus flagellum (NC_022837.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	72	1,023	952 bp	+	43.5%
tRNA-Val	Transfer RNA	1,032	1,103	72 bp	+	–
16S rRNA	Ribosomal RNA	1,178	2,748	1,571 bp	+	40.2%
tRNA-Leu (UUR)	Transfer RNA	2,808	2,882	75 bp	+	–
ND1	Protein-coding gene	2,883	3,857	975 bp	+	44.4%
tRNA-Ile	Transfer RNA	3,859	3,926	68 bp	+	–
tRNA-Gln	Transfer RNA	3,928	3,999	72 bp	−	–
tRNA-Met	Transfer RNA	4,000	4,069	70 bp	+	–
ND2	Protein-coding gene	4,070	5,116	1,047 bp	+	41.4%
tRNA-Trp	Transfer RNA	5,117	5,184	68 bp	+	–
tRNA-Ala	Transfer RNA	5,186	5,254	69 bp	−	–
tRNA-Asn	Transfer RNA	5,256	5,328	73 bp	−	–
tRNA-Cys	Transfer RNA	5,362	5,429	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,435	5,502	68 bp	+	–
COX1	Protein-coding gene	5,509	7,062	1,554 bp	+	43.0%
tRNA-Ser (UCN)	Transfer RNA	7,067	7,137	71 bp	−	–
tRNA-Asp	Transfer RNA	7,138	7,208	71 bp	+	–
COX2	Protein-coding gene	7,212	7,902	691 bp	+	40.1%
tRNA-Lys	Transfer RNA	7,903	7,976	74 bp	+	–
ATP8	Protein-coding gene	7,978	8,145	168 bp	+	36.9%
ATP6	Protein-coding gene	8,136	8,819	684 bp	+	41.2%
COX3	Protein-coding gene	8,819	9,604	786 bp	+	45.7%
tRNA-Gly	Transfer RNA	9,613	9,684	72 bp	+	–
ND3	Protein-coding gene	9,686	10,034	349 bp	+	45.0%
tRNA-Arg	Transfer RNA	10,035	10,108	74 bp	+	–
ND4L	Protein-coding gene	10,109	10,405	297 bp	+	41.8%
ND4	Protein-coding gene	10,399	11,779	1,381 bp	+	42.7%
tRNA-His	Transfer RNA	11,780	11,848	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,850	11,918	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,921	11,992	72 bp	+	–
ND5	Protein-coding gene	11,993	13,825	1,833 bp	+	40.5%
ND6	Protein-coding gene	13,822	14,343	522 bp	−	43.9%
tRNA-Glu	Transfer RNA	14,345	14,413	69 bp	−	–
CYTB	Protein-coding gene	14,416	15,558	1,143 bp	+	43.8%
tRNA-Thr	Transfer RNA	15,565	15,638	74 bp	+	–
tRNA-Pro	Transfer RNA	15,643	15,711	69 bp	−	–
D-loop	Control region	15,712	20,201	4,490 bp	–	37.4%