Alopias pelagicus

Pelagic thresher shark

Maximum lifespan

29 yr

AnAge record

mtDNA size

16,692 bp

RefSeq NC_022822.1

GC content

38.63%

Whole genome

Non-coding

1,120 bp

D-loop 1,062 bp

Where Pelagic thresher shark sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pelagic thresher shark has the 486th longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,692 bp

GC skew (G − C) / (G + C): −0.312
AT skew (A − T) / (A + T): +0.045

Life history

Maximum lifespan: 29 years
Female sexual maturity: 8.6 years
Male sexual maturity: 7.5 years
Litter or clutch size: 2

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01794)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,692 bp

Protein-coding11,402 bp

12S rRNA951 bp

16S rRNA1,668 bp

All tRNA1,551 bp

D-loop1,062 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Alopias pelagicus genes

ND1NADH dehydrogenase subunit 1	975 bp	30.2%	30.5%	11.6%	27.8%	39.39%	−0.411	−0.005
ND2NADH dehydrogenase subunit 2	1,043 bp	31.7%	29.9%	9.6%	28.8%	38.35%	−0.500	+0.030
COX1Cytochrome c oxidase subunit I	1,554 bp	29.0%	32.8%	15.7%	22.5%	38.22%	−0.178	−0.063
COX2Cytochrome c oxidase subunit II	691 bp	32.6%	30.0%	14.2%	23.3%	37.48%	−0.243	+0.042
ATP8ATP synthase F0 subunit 8	168 bp	39.3%	29.8%	6.5%	24.4%	30.95%	−0.577	+0.138
ATP6ATP synthase F0 subunit 6	684 bp	30.8%	30.4%	10.4%	28.4%	38.74%	−0.464	+0.007
COX3Cytochrome c oxidase subunit III	786 bp	28.9%	29.8%	15.3%	26.1%	41.35%	−0.262	−0.015
ND3NADH dehydrogenase subunit 3	349 bp	25.5%	34.1%	14.0%	26.4%	40.40%	−0.305	−0.144
ND4LNADH dehydrogenase subunit 4L	297 bp	26.9%	32.0%	11.1%	30.0%	41.08%	−0.459	−0.086
ND4NADH dehydrogenase subunit 4	1,381 bp	31.6%	29.8%	11.0%	27.6%	38.60%	−0.430	+0.031
ND5NADH dehydrogenase subunit 5	1,830 bp	32.0%	29.0%	10.2%	28.9%	39.07%	−0.480	+0.049
ND6NADH dehydrogenase subunit 6	522 bp	41.8%	19.2%	8.4%	30.7%	39.08%	−0.569	+0.371
CYTBCytochrome b	1,145 bp	28.9%	29.9%	12.1%	29.1%	41.22%	−0.411	−0.016
12S rRNA12S ribosomal RNA	951 bp	33.5%	24.0%	19.1%	23.3%	42.48%	−0.099	+0.166
16S rRNA16S ribosomal RNA	1,668 bp	36.6%	27.0%	16.2%	20.1%	36.33%	−0.106	+0.151
D-loopControl region (D-loop)	1,062 bp	33.1%	33.1%	13.0%	20.9%	33.90%	−0.233	0.000

Codon usage

Counts per codon, darker is more frequent

Gene

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU116

UUC115

Leu L17.5%

UUA186

UUG19

CUU116

CUC112

CUA220

CUG12

Ile I9.1%

AUU191

AUC154

Met M4.7%

AUA153

AUG26

Val V4.7%

GUU50

GUC32

GUA77

GUG18

Ser S7.0%

UCU50

UCC59

UCA101

UCG2

AGU19

AGC34

Pro P5.4%

CCU46

CCC55

CCA104

CCG1

Thr T7.3%

ACU47

ACC96

ACA131

ACG5

Ala A7.3%

GCU76

GCC106

GCA92

GCG5

Tyr Y3.2%

UAU68

UAC55

His H2.6%

CAU55

CAC45

Gln Q2.6%

CAA96

CAG4

Asn N4.0%

AAU69

AAC84

Lys K2.1%

AAA81

AAG0

Asp D1.8%

GAU35

GAC34

Glu E2.7%

GAA100

GAG4

Cys C0.7%

UGU14

UGC11

Trp W3.2%

UGA114

UGG6

Arg R1.9%

CGU12

CGC17

CGA40

CGG3

Gly G5.9%

GGU44

GGC67

GGA94

GGG20

Stop 0.2%

UAA7

UAG0

AGA0

AGG1

Genome map

38 annotated features in NC_022822.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (38.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Alopias pelagicus (NC_022822.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	70	70 bp	+	–
12S rRNA	Ribosomal RNA	71	1,021	951 bp	+	42.5%
tRNA-Val	Transfer RNA	1,022	1,093	72 bp	+	–
16S rRNA	Ribosomal RNA	1,094	2,761	1,668 bp	+	36.3%
tRNA-Leu (UUR)	Transfer RNA	2,762	2,836	75 bp	+	–
ND1	Protein-coding gene	2,837	3,811	975 bp	+	39.4%
tRNA-Ile	Transfer RNA	3,813	3,881	69 bp	+	–
tRNA-Gln	Transfer RNA	3,880	3,951	72 bp	−	–
tRNA-Met	Transfer RNA	3,952	4,020	69 bp	+	–
ND2	Protein-coding gene	4,021	5,063	1,043 bp	+	38.4%
tRNA-Trp	Transfer RNA	5,064	5,134	71 bp	+	–
tRNA-Ala	Transfer RNA	5,136	5,204	69 bp	−	–
tRNA-Asn	Transfer RNA	5,205	5,277	73 bp	−	–
tRNA-Cys	Transfer RNA	5,311	5,377	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,379	5,448	70 bp	−	–
COX1	Protein-coding gene	5,450	7,003	1,554 bp	+	38.2%
tRNA-Ser (UCN)	Transfer RNA	7,006	7,076	71 bp	−	–
tRNA-Asp	Transfer RNA	7,081	7,150	70 bp	+	–
COX2	Protein-coding gene	7,158	7,848	691 bp	+	37.5%
tRNA-Lys	Transfer RNA	7,849	7,922	74 bp	+	–
ATP8	Protein-coding gene	7,924	8,091	168 bp	+	31.0%
ATP6	Protein-coding gene	8,082	8,765	684 bp	+	38.7%
COX3	Protein-coding gene	8,765	9,550	786 bp	+	41.4%
tRNA-Gly	Transfer RNA	9,553	9,622	70 bp	+	–
ND3	Protein-coding gene	9,623	9,971	349 bp	+	40.4%
tRNA-Arg	Transfer RNA	9,972	10,041	70 bp	+	–
ND4L	Protein-coding gene	10,042	10,338	297 bp	+	41.1%
ND4	Protein-coding gene	10,332	11,712	1,381 bp	+	38.6%
tRNA-His	Transfer RNA	11,713	11,781	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,782	11,848	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,849	11,920	72 bp	+	–
ND5	Protein-coding gene	11,921	13,750	1,830 bp	+	39.1%
ND6	Protein-coding gene	13,746	14,267	522 bp	−	39.1%
tRNA-Glu	Transfer RNA	14,268	14,337	70 bp	−	–
CYTB	Protein-coding gene	14,341	15,485	1,145 bp	+	41.2%
tRNA-Thr	Transfer RNA	15,486	15,559	74 bp	+	–
tRNA-Pro	Transfer RNA	15,562	15,630	69 bp	−	–
D-loop	Control region	15,631	16,692	1,062 bp	–	33.9%