Alopias superciliosus
Bigeye thresher
GC content
39.29%
Whole genome
Non-coding
1,152 bp
D-loop 1,062 bp
Where Bigeye thresher sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bigeye thresher has the 838th longest lifespan of them.
- This species
- Other sharks and rays
- Other classes
Base composition
Whole genome16,719 bp
- GC skew (G − C) / (G + C)
- −0.311
- AT skew (A − T) / (A + T)
- +0.047
Life history
- Maximum lifespan
- 21 years
- Adult weight
- 200.1 kg
- Female sexual maturity
- 12.8 years
- Male sexual maturity
- 10 years
- Litter or clutch size
- 2
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01795)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,719 bp
Protein-coding11,402 bp
12S rRNA955 bp
16S rRNA1,664 bp
All tRNA1,550 bp
D-loop1,062 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 39.18% | −0.424 | +0.002 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,043 bp | 41.32% | −0.517 | +0.056 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 40.80% | −0.186 | −0.067 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 38.35% | −0.253 | +0.042 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 31.55% | −0.547 | +0.113 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 38.16% | −0.425 | +0.002 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 41.73% | −0.262 | −0.017 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 40.69% | −0.310 | −0.121 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 43.77% | −0.477 | −0.078 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 38.96% | −0.398 | +0.004 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,830 bp | 38.80% | −0.470 | +0.039 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 39.46% | −0.563 | +0.380 | |||||
| CYTBCytochrome b | 1,145 bp | 41.83% | −0.411 | −0.030 | |||||
| 12S rRNA12S ribosomal RNA | 955 bp | 41.36% | −0.114 | +0.175 | |||||
| 16S rRNA16S ribosomal RNA | 1,664 bp | 36.78% | −0.098 | +0.152 | |||||
| D-loopControl region (D-loop) | 1,062 bp | 35.69% | −0.224 | +0.019 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU123
UUC113
Leu L17.5%
UUA178
UUG19
CUU110
CUC128
CUA208
CUG22
Ile I8.9%
AUU188
AUC149
Met M4.8%
AUA150
AUG32
Val V4.7%
GUU44
GUC41
GUA77
GUG15
Ser S7.0%
UCU45
UCC68
UCA96
UCG3
AGU19
AGC36
Pro P5.4%
CCU43
CCC55
CCA105
CCG3
Thr T7.3%
ACU43
ACC104
ACA125
ACG7
Ala A7.4%
GCU69
GCC115
GCA90
GCG7
Tyr Y3.2%
UAU77
UAC43
His H2.7%
CAU47
CAC56
Gln Q2.6%
CAA93
CAG6
Asn N4.0%
AAU67
AAC85
Lys K2.2%
AAA80
AAG2
Asp D1.8%
GAU38
GAC32
Glu E2.7%
GAA91
GAG10
Cys C0.6%
UGU10
UGC14
Trp W3.2%
UGA111
UGG9
Arg R1.9%
CGU16
CGC14
CGA37
CGG5
Gly G5.9%
GGU43
GGC66
GGA94
GGG22
Stop 0.2%
UAA7
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_021443.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (39.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,025 | 955 bp | + | 41.4% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,758 | 1,664 bp | + | 36.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,758 | 2,832 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,833 | 3,807 | 975 bp | + | 39.2% |
| tRNA-Ile | Transfer RNA | 3,810 | 3,878 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,877 | 3,948 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,949 | 4,017 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,018 | 5,060 | 1,043 bp | + | 41.3% |
| tRNA-Trp | Transfer RNA | 5,061 | 5,131 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,133 | 5,201 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,202 | 5,274 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,308 | 5,374 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,376 | 5,445 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,447 | 7,000 | 1,554 bp | + | 40.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,003 | 7,073 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,078 | 7,147 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,152 | 7,842 | 691 bp | + | 38.4% |
| tRNA-Lys | Transfer RNA | 7,843 | 7,916 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,918 | 8,085 | 168 bp | + | 31.6% |
| ATP6 | Protein-coding gene | 8,076 | 8,759 | 684 bp | + | 38.2% |
| COX3 | Protein-coding gene | 8,759 | 9,544 | 786 bp | + | 41.7% |
| tRNA-Gly | Transfer RNA | 9,547 | 9,615 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,616 | 9,964 | 349 bp | + | 40.7% |
| tRNA-Arg | Transfer RNA | 9,965 | 10,034 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,035 | 10,331 | 297 bp | + | 43.8% |
| ND4 | Protein-coding gene | 10,325 | 11,705 | 1,381 bp | + | 39.0% |
| tRNA-His | Transfer RNA | 11,706 | 11,774 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,775 | 11,841 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,842 | 11,913 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,914 | 13,743 | 1,830 bp | + | 38.8% |
| ND6 | Protein-coding gene | 13,739 | 14,260 | 522 bp | − | 39.5% |
| tRNA-Glu | Transfer RNA | 14,261 | 14,330 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,333 | 15,477 | 1,145 bp | + | 41.8% |
| tRNA-Thr | Transfer RNA | 15,478 | 15,551 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,589 | 15,657 | 69 bp | − | – |
| D-loop | Control region | 15,658 | 16,719 | 1,062 bp | – | 35.7% |