Afghanodon mustersi
Afghanistan salamander
GC content
34.23%
Whole genome
Non-coding
960 bp
D-loop 799 bp
Where Afghanistan salamander sits among 2,335 species
Whole-genome GC content against maximum lifespan. Afghanistan salamander has the 1,493rd longest lifespan of them.
- This species
- Other amphibians
- Other classes
Base composition
Whole genome16,383 bp
- GC skew (G − C) / (G + C)
- −0.197
- AT skew (A − T) / (A + T)
- +0.016
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Renamed in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
- Earlier name
- Batrachuperus mustersi
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,383 bp
Protein-coding11,364 bp
12S rRNA934 bp
16S rRNA1,603 bp
All tRNA1,527 bp
D-loop799 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 972 bp | 31.69% | −0.214 | −0.078 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,044 bp | 28.83% | −0.409 | −0.007 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 37.85% | −0.101 | −0.120 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 33.14% | −0.184 | +0.022 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 25.00% | −0.286 | +0.032 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 30.99% | −0.321 | −0.030 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 36.18% | −0.120 | −0.086 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 32.19% | −0.168 | −0.109 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 32.32% | −0.167 | −0.124 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 34.04% | −0.292 | −0.001 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,819 bp | 32.33% | −0.282 | +0.006 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 34.88% | −0.403 | +0.408 | |||||
| CYTBCytochrome b | 1,142 bp | 40.89% | −0.302 | −0.049 | |||||
| 12S rRNA12S ribosomal RNA | 934 bp | 38.01% | −0.093 | +0.171 | |||||
| 16S rRNA16S ribosomal RNA | 1,603 bp | 31.00% | −0.018 | +0.172 | |||||
| D-loopControl region (D-loop) | 799 bp | 33.84% | −0.096 | −0.042 |
Codon usage
Counts per codon, darker is more frequent3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F7.0%
UUU213
UUC51
Leu L15.9%
UUA305
UUG18
CUU104
CUC45
CUA113
CUG19
Ile I8.9%
AUU280
AUC57
Met M6.4%
AUA209
AUG33
Val V4.6%
GUU70
GUC16
GUA69
GUG19
Ser S7.6%
UCU66
UCC44
UCA124
UCG7
AGU19
AGC30
Pro P5.2%
CCU56
CCC35
CCA99
CCG8
Thr T6.9%
ACU63
ACC62
ACA129
ACG7
Ala A7.0%
GCU58
GCC63
GCA135
GCG9
Tyr Y3.1%
UAU85
UAC31
His H2.6%
CAU43
CAC54
Gln Q2.5%
CAA85
CAG10
Asn N4.2%
AAU104
AAC55
Lys K2.3%
AAA82
AAG7
Asp D1.7%
GAU37
GAC29
Glu E2.6%
GAA80
GAG17
Cys C0.7%
UGU14
UGC12
Trp W3.0%
UGA102
UGG12
Arg R1.9%
CGU11
CGC10
CGA41
CGG9
Gly G5.9%
GGU37
GGC42
GGA99
GGG46
Stop 0.2%
UAA6
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_008090.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (34.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,003 | 934 bp | + | 38.0% |
| tRNA-Val | Transfer RNA | 1,004 | 1,072 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,073 | 2,675 | 1,603 bp | + | 31.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,676 | 2,750 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,751 | 3,722 | 972 bp | + | 31.7% |
| tRNA-Ile | Transfer RNA | 3,722 | 3,792 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,792 | 3,863 | 72 bp | − | – |
| tRNA-Met | Transfer RNA | 3,863 | 3,931 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,932 | 4,975 | 1,044 bp | + | 28.8% |
| tRNA-Trp | Transfer RNA | 4,974 | 5,042 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,045 | 5,113 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,115 | 5,187 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,221 | 5,286 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,287 | 5,354 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,356 | 6,906 | 1,551 bp | + | 37.9% |
| tRNA-Ser (AGY) | Transfer RNA | 6,907 | 6,977 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,980 | 7,047 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,049 | 7,736 | 688 bp | + | 33.1% |
| tRNA-Lys | Transfer RNA | 7,737 | 7,806 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 7,808 | 7,975 | 168 bp | + | 25.0% |
| ATP6 | Protein-coding gene | 7,966 | 8,649 | 684 bp | + | 31.0% |
| COX3 | Protein-coding gene | 8,649 | 9,433 | 785 bp | + | 36.2% |
| tRNA-Gly | Transfer RNA | 9,433 | 9,501 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,502 | 9,852 | 351 bp | + | 32.2% |
| tRNA-Arg | Transfer RNA | 9,853 | 9,917 | 65 bp | + | – |
| ND4L | Protein-coding gene | 9,920 | 10,216 | 297 bp | + | 32.3% |
| ND4 | Protein-coding gene | 10,210 | 11,587 | 1,378 bp | + | 34.0% |
| tRNA-His | Transfer RNA | 11,588 | 11,656 | 69 bp | + | – |
| tRNA-Ser (UCN) | Transfer RNA | 11,657 | 11,723 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,724 | 11,795 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,796 | 13,614 | 1,819 bp | + | 32.3% |
| ND6 | Protein-coding gene | 13,599 | 14,117 | 519 bp | − | 34.9% |
| tRNA-Glu | Transfer RNA | 14,118 | 14,185 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,189 | 15,330 | 1,142 bp | + | 40.9% |
| tRNA-Thr | Transfer RNA | 15,330 | 15,397 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,513 | 15,584 | 72 bp | − | – |
| D-loop | Control region | 15,585 | 16,383 | 799 bp | – | 33.8% |