Bombina orientalis

Oriental firebelly toad

Maximum lifespan

15.8 yr

AnAge record

mtDNA size

17,847 bp

RefSeq NC_006689.1

GC content

42.20%

Whole genome

Non-coding

2,440 bp

D-loop 2,372 bp

Where Oriental firebelly toad sits among 2,335 species

Whole-genome GC content against maximum lifespan. Oriental firebelly toad has the 1,182nd longest lifespan of them.

This species
Other amphibians
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,847 bp

GC skew (G − C) / (G + C): −0.264
AT skew (A − T) / (A + T): +0.037

Life history

Maximum lifespan: 15.8 years
Litter or clutch size: 148

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00034)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, large sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,847 bp

Protein-coding11,341 bp

12S rRNA933 bp

16S rRNA1,599 bp

All tRNA1,534 bp

D-loop2,372 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Bombina orientalis genes

ND1NADH dehydrogenase subunit 1	962 bp	26.3%	30.9%	14.1%	28.7%	42.83%	−0.340	−0.080
ND2NADH dehydrogenase subunit 2	1,045 bp	31.0%	25.0%	12.6%	31.4%	44.02%	−0.426	+0.108
COX1Cytochrome c oxidase subunit I	1,554 bp	26.2%	29.3%	18.2%	26.3%	44.47%	−0.181	−0.057
COX2Cytochrome c oxidase subunit II	688 bp	31.1%	28.3%	15.6%	25.0%	40.55%	−0.233	+0.046
ATP8ATP synthase F0 subunit 8	168 bp	36.9%	22.0%	10.1%	31.0%	41.07%	−0.507	+0.253
ATP6ATP synthase F0 subunit 6	684 bp	28.5%	30.0%	12.1%	29.4%	41.52%	−0.415	−0.025
COX3Cytochrome c oxidase subunit III	784 bp	25.0%	30.1%	17.3%	27.6%	44.90%	−0.227	−0.093
ND3NADH dehydrogenase subunit 3	343 bp	23.9%	33.2%	15.5%	27.4%	42.86%	−0.279	−0.163
ND4LNADH dehydrogenase subunit 4L	297 bp	22.2%	28.6%	17.5%	31.6%	49.16%	−0.288	−0.126
ND4NADH dehydrogenase subunit 4	1,378 bp	28.0%	28.9%	13.7%	29.4%	43.11%	−0.364	−0.015
ND5NADH dehydrogenase subunit 5	1,809 bp	29.6%	28.9%	13.0%	28.4%	41.46%	−0.371	+0.012
ND6NADH dehydrogenase subunit 6	510 bp	41.0%	14.9%	13.7%	30.4%	44.12%	−0.378	+0.467
CYTBCytochrome b	1,141 bp	26.0%	29.3%	14.6%	30.1%	44.70%	−0.345	−0.059
12S rRNA12S ribosomal RNA	933 bp	33.0%	19.7%	20.6%	26.7%	47.27%	−0.129	+0.252
16S rRNA16S ribosomal RNA	1,599 bp	35.6%	22.2%	18.2%	24.0%	42.21%	−0.138	+0.232
D-loopControl region (D-loop)	2,372 bp	32.2%	34.0%	13.9%	19.9%	33.81%	−0.180	−0.028

Codon usage

Counts per codon, darker is more frequent

Gene

3,785 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU139

UUC94

Leu L16.4%

UUA120

UUG35

CUU131

CUC118

CUA160

CUG55

Ile I8.5%

AUU185

AUC137

Met M4.6%

AUA127

AUG49

Val V5.2%

GUU61

GUC50

GUA58

GUG27

Ser S7.5%

UCU55

UCC63

UCA92

UCG15

AGU20

AGC37

Pro P5.5%

CCU43

CCC51

CCA98

CCG15

Thr T8.3%

ACU52

ACC99

ACA146

ACG17

Ala A8.1%

GCU48

GCC149

GCA99

GCG10

Tyr Y2.8%

UAU48

UAC58

His H2.7%

CAU25

CAC76

Gln Q2.6%

CAA81

CAG17

Asn N3.4%

AAU49

AAC81

Lys K2.0%

AAA69

AAG8

Asp D1.8%

GAU17

GAC53

Glu E2.5%

GAA55

GAG41

Cys C0.7%

UGU8

UGC19

Trp W3.0%

UGA104

UGG10

Arg R2.0%

CGU16

CGC16

CGA38

CGG4

Gly G6.1%

GGU35

GGC76

GGA80

GGG40

Stop 0.2%

UAA5

UAG0

AGA1

AGG0

Genome map

38 annotated features in NC_006689.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (42.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Bombina orientalis (NC_006689.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,001	933 bp	+	47.3%
tRNA-Val	Transfer RNA	1,002	1,069	68 bp	+	–
16S rRNA	Ribosomal RNA	1,070	2,668	1,599 bp	+	42.2%
tRNA-Leu (UUR)	Transfer RNA	2,669	2,743	75 bp	+	–
ND1	Protein-coding gene	2,744	3,705	962 bp	+	42.8%
tRNA-Ile	Transfer RNA	3,706	3,776	71 bp	+	–
tRNA-Gln	Transfer RNA	3,776	3,846	71 bp	−	–
tRNA-Met	Transfer RNA	3,846	3,914	69 bp	+	–
ND2	Protein-coding gene	3,915	4,959	1,045 bp	+	44.0%
tRNA-Trp	Transfer RNA	4,960	5,028	69 bp	+	–
tRNA-Ala	Transfer RNA	5,030	5,098	69 bp	−	–
tRNA-Asn	Transfer RNA	5,100	5,172	73 bp	−	–
tRNA-Cys	Transfer RNA	5,199	5,264	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,265	5,334	70 bp	−	–
COX1	Protein-coding gene	5,336	6,889	1,554 bp	+	44.5%
tRNA-Ser (UCN)	Transfer RNA	6,890	6,960	71 bp	−	–
tRNA-Asp	Transfer RNA	6,964	7,031	68 bp	+	–
COX2	Protein-coding gene	7,034	7,721	688 bp	+	40.6%
tRNA-Lys	Transfer RNA	7,722	7,793	72 bp	+	–
ATP8	Protein-coding gene	7,795	7,962	168 bp	+	41.1%
ATP6	Protein-coding gene	7,953	8,636	684 bp	+	41.5%
COX3	Protein-coding gene	8,640	9,423	784 bp	+	44.9%
tRNA-Gly	Transfer RNA	9,424	9,495	72 bp	+	–
ND3	Protein-coding gene	9,496	9,838	343 bp	+	42.9%
tRNA-Arg	Transfer RNA	9,839	9,907	69 bp	+	–
ND4L	Protein-coding gene	9,908	10,204	297 bp	+	49.2%
ND4	Protein-coding gene	10,198	11,575	1,378 bp	+	43.1%
tRNA-His	Transfer RNA	11,576	11,643	68 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,644	11,710	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,711	11,783	73 bp	+	–
ND5	Protein-coding gene	11,784	13,592	1,809 bp	+	41.5%
ND6	Protein-coding gene	13,588	14,097	510 bp	−	44.1%
tRNA-Glu	Transfer RNA	14,098	14,166	69 bp	−	–
CYTB	Protein-coding gene	14,173	15,313	1,141 bp	+	44.7%
tRNA-Thr	Transfer RNA	15,314	15,382	69 bp	+	–
tRNA-Pro	Transfer RNA	15,407	15,475	69 bp	−	–
D-loop	Control region	15,476	17,847	2,372 bp	–	33.8%