Bombina variegata

Yellow-bellied toad

Maximum lifespan

29 yr

AnAge record

mtDNA size

18,551 bp

RefSeq NC_009258.1

GC content

42.06%

Whole genome

Non-coding

3,143 bp

D-loop 3,076 bp

Where Yellow-bellied toad sits among 2,335 species

Whole-genome GC content against maximum lifespan. Yellow-bellied toad has the 484th longest lifespan of them.

This species
Other amphibians
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome18,551 bp

GC skew (G − C) / (G + C): −0.240
AT skew (A − T) / (A + T): +0.036

Life history

Maximum lifespan: 29 years
Litter or clutch size: 73

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00035)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome18,551 bp

Protein-coding11,342 bp

12S rRNA933 bp

16S rRNA1,601 bp

All tRNA1,533 bp

D-loop3,076 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Bombina variegata genes

ND1NADH dehydrogenase subunit 1	963 bp	26.8%	30.5%	14.7%	27.9%	42.68%	−0.309	−0.065
ND2NADH dehydrogenase subunit 2	1,045 bp	31.7%	25.5%	11.8%	31.1%	42.87%	−0.451	+0.109
COX1Cytochrome c oxidase subunit I	1,554 bp	25.0%	29.8%	19.4%	25.7%	45.17%	−0.140	−0.087
COX2Cytochrome c oxidase subunit II	688 bp	32.6%	25.3%	15.8%	26.3%	42.15%	−0.248	+0.126
ATP8ATP synthase F0 subunit 8	168 bp	36.9%	23.2%	9.5%	30.4%	39.88%	−0.522	+0.228
ATP6ATP synthase F0 subunit 6	684 bp	27.6%	31.1%	12.6%	28.7%	41.23%	−0.390	−0.060
COX3Cytochrome c oxidase subunit III	784 bp	25.3%	28.1%	17.7%	29.0%	46.68%	−0.240	−0.053
ND3NADH dehydrogenase subunit 3	343 bp	25.7%	33.8%	15.5%	25.1%	40.53%	−0.237	−0.137
ND4LNADH dehydrogenase subunit 4L	297 bp	21.5%	28.3%	17.5%	32.7%	50.17%	−0.302	−0.135
ND4NADH dehydrogenase subunit 4	1,378 bp	28.7%	28.3%	13.6%	29.4%	42.96%	−0.368	+0.008
ND5NADH dehydrogenase subunit 5	1,809 bp	29.7%	28.6%	13.6%	28.1%	41.74%	−0.348	+0.019
ND6NADH dehydrogenase subunit 6	510 bp	40.6%	13.5%	13.5%	32.4%	45.88%	−0.410	+0.500
CYTBCytochrome b	1,141 bp	26.8%	28.8%	14.5%	29.8%	44.35%	−0.344	−0.036
12S rRNA12S ribosomal RNA	933 bp	32.5%	20.4%	20.2%	27.0%	47.16%	−0.145	+0.229
16S rRNA16S ribosomal RNA	1,601 bp	35.0%	22.6%	18.8%	23.5%	42.35%	−0.112	+0.216
D-loopControl region (D-loop)	3,076 bp	32.0%	34.4%	15.6%	18.1%	33.65%	−0.074	−0.037

Codon usage

Counts per codon, darker is more frequent

Gene

3,786 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU126

UUC105

Leu L16.4%

UUA115

UUG36

CUU131

CUC112

CUA159

CUG67

Ile I8.4%

AUU192

AUC126

Met M4.8%

AUA119

AUG63

Val V5.2%

GUU58

GUC47

GUA66

GUG24

Ser S7.3%

UCU54

UCC52

UCA100

UCG13

AGU10

AGC46

Pro P5.5%

CCU26

CCC57

CCA103

CCG23

Thr T8.3%

ACU57

ACC90

ACA155

ACG11

Ala A8.2%

GCU60

GCC134

GCA104

GCG13

Tyr Y2.8%

UAU43

UAC63

His H2.7%

CAU29

CAC74

Gln Q2.6%

CAA81

CAG17

Asn N3.4%

AAU54

AAC75

Lys K2.0%

AAA74

AAG3

Asp D1.8%

GAU21

GAC48

Glu E2.5%

GAA55

GAG41

Cys C0.7%

UGU11

UGC16

Trp W3.0%

UGA101

UGG13

Arg R2.0%

CGU11

CGC23

CGA33

CGG7

Gly G6.1%

GGU23

GGC82

GGA80

GGG47

Stop 0.2%

UAA5

UAG1

AGA1

AGG0

Genome map

38 annotated features in NC_009258.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (42.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Bombina variegata (NC_009258.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,001	933 bp	+	47.2%
tRNA-Val	Transfer RNA	1,002	1,069	68 bp	+	–
16S rRNA	Ribosomal RNA	1,070	2,670	1,601 bp	+	42.4%
tRNA-Leu (UUR)	Transfer RNA	2,671	2,745	75 bp	+	–
ND1	Protein-coding gene	2,746	3,708	963 bp	+	42.7%
tRNA-Ile	Transfer RNA	3,708	3,776	69 bp	+	–
tRNA-Gln	Transfer RNA	3,778	3,847	70 bp	−	–
tRNA-Met	Transfer RNA	3,848	3,916	69 bp	+	–
ND2	Protein-coding gene	3,917	4,961	1,045 bp	+	42.9%
tRNA-Trp	Transfer RNA	4,962	5,031	70 bp	+	–
tRNA-Ala	Transfer RNA	5,032	5,101	70 bp	−	–
tRNA-Asn	Transfer RNA	5,102	5,174	73 bp	−	–
tRNA-Cys	Transfer RNA	5,201	5,266	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,267	5,335	69 bp	−	–
COX1	Protein-coding gene	5,337	6,890	1,554 bp	+	45.2%
tRNA-Ser (UCN)	Transfer RNA	6,891	6,961	71 bp	−	–
tRNA-Asp	Transfer RNA	6,965	7,031	67 bp	+	–
COX2	Protein-coding gene	7,034	7,721	688 bp	+	42.2%
tRNA-Lys	Transfer RNA	7,722	7,793	72 bp	+	–
ATP8	Protein-coding gene	7,795	7,962	168 bp	+	39.9%
ATP6	Protein-coding gene	7,953	8,636	684 bp	+	41.2%
COX3	Protein-coding gene	8,640	9,423	784 bp	+	46.7%
tRNA-Gly	Transfer RNA	9,424	9,495	72 bp	+	–
ND3	Protein-coding gene	9,496	9,838	343 bp	+	40.5%
tRNA-Arg	Transfer RNA	9,839	9,907	69 bp	+	–
ND4L	Protein-coding gene	9,908	10,204	297 bp	+	50.2%
ND4	Protein-coding gene	10,198	11,575	1,378 bp	+	43.0%
tRNA-His	Transfer RNA	11,576	11,643	68 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,644	11,710	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,711	11,783	73 bp	+	–
ND5	Protein-coding gene	11,784	13,592	1,809 bp	+	41.7%
ND6	Protein-coding gene	13,588	14,097	510 bp	−	45.9%
tRNA-Glu	Transfer RNA	14,098	14,166	69 bp	−	–
CYTB	Protein-coding gene	14,173	15,313	1,141 bp	+	44.4%
tRNA-Thr	Transfer RNA	15,314	15,382	69 bp	+	–
tRNA-Pro	Transfer RNA	15,407	15,475	69 bp	−	–
D-loop	Control region	15,476	18,551	3,076 bp	–	33.7%