Callorhinchus capensis

Cape elephantfish

Maximum lifespan

12 yr

AnAge record

mtDNA size

16,760 bp

RefSeq NC_014284.1

GC content

34.05%

Whole genome

Non-coding

1,259 bp

Including the D-loop

Where Cape elephantfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Cape elephantfish has the 1,414th longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,760 bp

GC skew (G − C) / (G + C): −0.242
AT skew (A − T) / (A + T): −0.019

Life history

Maximum lifespan: 12 years
Adult weight: 2.9 kg
Female sexual maturity: 4.2 years
Male sexual maturity: 3.3 years
Litter or clutch size: 22

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01788)

About this record

Lifespan source: AnAge build 15
Based on: an observed animal, origin not stated
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,760 bp

Protein-coding11,374 bp

12S rRNA952 bp

16S rRNA1,653 bp

All tRNA1,535 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Callorhinchus capensis genes

ND1NADH dehydrogenase subunit 1	960 bp	29.0%	36.3%	11.6%	23.2%	34.79%	−0.335	−0.112
ND2NADH dehydrogenase subunit 2	1,042 bp	33.9%	34.5%	8.7%	22.9%	31.67%	−0.448	−0.008
COX1Cytochrome c oxidase subunit I	1,560 bp	27.3%	36.4%	14.9%	21.4%	36.28%	−0.180	−0.143
COX2Cytochrome c oxidase subunit II	691 bp	31.3%	33.0%	14.2%	21.6%	35.75%	−0.206	−0.027
ATP8ATP synthase F0 subunit 8	165 bp	39.4%	36.4%	3.6%	20.6%	24.24%	−0.700	+0.040
ATP6ATP synthase F0 subunit 6	684 bp	31.6%	36.5%	9.2%	22.7%	31.87%	−0.422	−0.073
COX3Cytochrome c oxidase subunit III	786 bp	28.2%	35.8%	14.9%	21.1%	36.01%	−0.173	−0.117
ND3NADH dehydrogenase subunit 3	349 bp	25.5%	41.8%	12.0%	20.6%	32.67%	−0.263	−0.243
ND4LNADH dehydrogenase subunit 4L	297 bp	29.0%	37.4%	11.4%	22.2%	33.67%	−0.320	−0.127
ND4NADH dehydrogenase subunit 4	1,376 bp	31.9%	35.1%	10.6%	22.4%	32.99%	−0.357	−0.048
ND5NADH dehydrogenase subunit 5	1,824 bp	33.2%	37.6%	9.5%	19.7%	29.22%	−0.351	−0.063
ND6NADH dehydrogenase subunit 6	522 bp	44.6%	23.8%	8.8%	22.8%	31.61%	−0.442	+0.305
CYTBCytochrome b	1,140 bp	28.1%	37.7%	12.2%	22.0%	34.21%	−0.287	−0.147
12S rRNA12S ribosomal RNA	952 bp	32.5%	25.3%	18.9%	23.3%	42.23%	−0.104	+0.124
16S rRNA16S ribosomal RNA	1,653 bp	37.4%	26.4%	16.9%	19.2%	36.12%	−0.062	+0.172

Codon usage

Counts per codon, darker is more frequent

Gene

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU162

UUC72

Leu L16.9%

UUA275

UUG8

CUU155

CUC50

CUA147

CUG7

Ile I9.5%

AUU247

AUC114

Met M5.5%

AUA184

AUG25

Val V4.4%

GUU70

GUC20

GUA73

GUG5

Ser S7.0%

UCU98

UCC40

UCA73

UCG2

AGU35

AGC19

Pro P5.3%

CCU85

CCC43

CCA68

CCG5

Thr T7.6%

ACU126

ACC44

ACA115

ACG5

Ala A6.6%

GCU114

GCC58

GCA76

GCG3

Tyr Y3.1%

UAU85

UAC33

His H2.7%

CAU74

CAC28

Gln Q2.4%

CAA85

CAG6

Asn N4.6%

AAU134

AAC41

Lys K2.4%

AAA88

AAG4

Asp D1.7%

GAU49

GAC15

Glu E2.5%

GAA89

GAG6

Cys C0.8%

UGU23

UGC7

Trp W3.0%

UGA109

UGG6

Arg R1.8%

CGU15

CGC10

CGA42

CGG3

Gly G5.6%

GGU92

GGC31

GGA79

GGG11

Stop 0.2%

UAA8

UAG0

AGA0

AGG1

Genome map

37 annotated features in NC_014284.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (34.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 37 features as a table

Annotated features of Callorhinchus capensis (NC_014284.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,020	952 bp	+	42.2%
tRNA-Val	Transfer RNA	1,021	1,091	71 bp	+	–
16S rRNA	Ribosomal RNA	1,092	2,744	1,653 bp	+	36.1%
tRNA-Leu (UUR)	Transfer RNA	2,745	2,819	75 bp	+	–
ND1	Protein-coding gene	2,820	3,779	960 bp	+	34.8%
tRNA-Ile	Transfer RNA	3,785	3,854	70 bp	+	–
tRNA-Gln	Transfer RNA	3,854	3,924	71 bp	−	–
tRNA-Met	Transfer RNA	3,924	3,992	69 bp	+	–
ND2	Protein-coding gene	3,993	5,034	1,042 bp	+	31.7%
tRNA-Trp	Transfer RNA	5,035	5,103	69 bp	+	–
tRNA-Ala	Transfer RNA	5,106	5,174	69 bp	−	–
tRNA-Asn	Transfer RNA	5,176	5,249	74 bp	−	–
tRNA-Cys	Transfer RNA	5,290	5,354	65 bp	−	–
tRNA-Tyr	Transfer RNA	5,355	5,422	68 bp	−	–
COX1	Protein-coding gene	5,424	6,983	1,560 bp	+	36.3%
tRNA-Ser (UCN)	Transfer RNA	6,971	7,042	72 bp	−	–
tRNA-Asp	Transfer RNA	7,050	7,118	69 bp	+	–
COX2	Protein-coding gene	7,121	7,811	691 bp	+	35.7%
tRNA-Lys	Transfer RNA	7,812	7,883	72 bp	+	–
ATP8	Protein-coding gene	7,884	8,048	165 bp	+	24.2%
ATP6	Protein-coding gene	8,039	8,722	684 bp	+	31.9%
COX3	Protein-coding gene	8,722	9,507	786 bp	+	36.0%
tRNA-Gly	Transfer RNA	9,508	9,576	69 bp	+	–
ND3	Protein-coding gene	9,577	9,925	349 bp	+	32.7%
tRNA-Arg	Transfer RNA	9,926	9,994	69 bp	+	–
ND4L	Protein-coding gene	9,995	10,291	297 bp	+	33.7%
ND4	Protein-coding gene	10,285	11,660	1,376 bp	+	33.0%
tRNA-His	Transfer RNA	11,661	11,729	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,730	11,797	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,798	11,869	72 bp	+	–
ND5	Protein-coding gene	11,870	13,693	1,824 bp	+	29.2%
ND6	Protein-coding gene	13,690	14,211	522 bp	−	31.6%
tRNA-Glu	Transfer RNA	14,212	14,280	69 bp	−	–
CYTB	Protein-coding gene	14,284	15,423	1,140 bp	+	34.2%
tRNA-Thr	Transfer RNA	15,428	15,497	70 bp	+	–
tRNA-Pro	Transfer RNA	15,499	15,567	69 bp	−	–