Callorhinchus milii
Elephant fish
GC content
33.73%
Whole genome
Non-coding
1,306 bp
Including the D-loop
Where Elephant fish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Elephant fish has the 1,905th longest lifespan of them.
- This species
- Other sharks and rays
- Other classes
Base composition
Whole genome16,769 bp
- GC skew (G − C) / (G + C)
- −0.236
- AT skew (A − T) / (A + T)
- −0.024
Life history
- Maximum lifespan
- 6 years
- Female sexual maturity
- 4.5 years
- Male sexual maturity
- 3 years
- Litter or clutch size
- 13
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01789)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,769 bp
Protein-coding11,374 bp
12S rRNA943 bp
16S rRNA1,624 bp
All tRNA1,535 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 960 bp | 34.27% | −0.319 | −0.122 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 31.48% | −0.433 | −0.020 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 35.45% | −0.161 | −0.156 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 35.25% | −0.222 | −0.021 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 23.64% | −0.641 | +0.016 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 31.43% | −0.433 | −0.070 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 35.62% | −0.171 | −0.119 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 33.24% | −0.276 | −0.236 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 33.33% | −0.313 | −0.131 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,376 bp | 31.98% | −0.345 | −0.056 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 29.06% | −0.336 | −0.070 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 30.46% | −0.447 | +0.295 | |||||
| CYTBCytochrome b | 1,140 bp | 33.86% | −0.275 | −0.157 | |||||
| 12S rRNA12S ribosomal RNA | 943 bp | 42.42% | −0.115 | +0.131 | |||||
| 16S rRNA16S ribosomal RNA | 1,624 bp | 36.45% | −0.054 | +0.174 |
Codon usage
Counts per codon, darker is more frequent3,785 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU169
UUC66
Leu L16.9%
UUA280
UUG6
CUU160
CUC44
CUA143
CUG6
Ile I9.5%
AUU253
AUC107
Met M5.5%
AUA188
AUG21
Val V4.5%
GUU68
GUC23
GUA72
GUG6
Ser S7.1%
UCU98
UCC43
UCA71
UCG3
AGU34
AGC19
Pro P5.2%
CCU90
CCC33
CCA69
CCG6
Thr T7.5%
ACU127
ACC41
ACA114
ACG3
Ala A6.7%
GCU118
GCC55
GCA76
GCG3
Tyr Y3.2%
UAU92
UAC29
His H2.6%
CAU73
CAC27
Gln Q2.4%
CAA86
CAG5
Asn N4.6%
AAU136
AAC39
Lys K2.4%
AAA88
AAG4
Asp D1.7%
GAU50
GAC13
Glu E2.5%
GAA89
GAG6
Cys C0.8%
UGU23
UGC6
Trp W3.0%
UGA107
UGG7
Arg R1.8%
CGU15
CGC10
CGA41
CGG3
Gly G5.6%
GGU98
GGC25
GGA80
GGG9
Stop 0.2%
UAA7
UAG1
AGA0
AGG1
Genome map
37 annotated features in NC_014285.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (33.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 73 | 1,015 | 943 bp | + | 42.4% |
| tRNA-Val | Transfer RNA | 1,021 | 1,091 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,127 | 2,750 | 1,624 bp | + | 36.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,755 | 2,829 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,830 | 3,789 | 960 bp | + | 34.3% |
| tRNA-Ile | Transfer RNA | 3,795 | 3,864 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,864 | 3,934 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,934 | 4,002 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,003 | 5,044 | 1,042 bp | + | 31.5% |
| tRNA-Trp | Transfer RNA | 5,045 | 5,113 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,116 | 5,184 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,186 | 5,258 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,300 | 5,364 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,365 | 5,432 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,434 | 6,993 | 1,560 bp | + | 35.5% |
| tRNA-Ser (UCN) | Transfer RNA | 6,981 | 7,052 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,060 | 7,128 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,131 | 7,821 | 691 bp | + | 35.3% |
| tRNA-Lys | Transfer RNA | 7,822 | 7,893 | 72 bp | + | – |
| ATP8 | Protein-coding gene | 7,894 | 8,058 | 165 bp | + | 23.6% |
| ATP6 | Protein-coding gene | 8,049 | 8,732 | 684 bp | + | 31.4% |
| COX3 | Protein-coding gene | 8,732 | 9,517 | 786 bp | + | 35.6% |
| tRNA-Gly | Transfer RNA | 9,518 | 9,586 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,587 | 9,935 | 349 bp | + | 33.2% |
| tRNA-Arg | Transfer RNA | 9,936 | 10,004 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,005 | 10,301 | 297 bp | + | 33.3% |
| ND4 | Protein-coding gene | 10,295 | 11,670 | 1,376 bp | + | 32.0% |
| tRNA-His | Transfer RNA | 11,671 | 11,739 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,740 | 11,807 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,808 | 11,879 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,880 | 13,703 | 1,824 bp | + | 29.1% |
| ND6 | Protein-coding gene | 13,700 | 14,221 | 522 bp | − | 30.5% |
| tRNA-Glu | Transfer RNA | 14,222 | 14,290 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,294 | 15,433 | 1,140 bp | + | 33.9% |
| tRNA-Thr | Transfer RNA | 15,438 | 15,508 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,509 | 15,577 | 69 bp | − | – |