Campylorhynchus brunneicapillus
Cactus wren
GC content
49.66%
Whole genome
Non-coding
1,302 bp
D-loop 1,200 bp
Where Cactus wren sits among 2,335 species
Whole-genome GC content against maximum lifespan. Cactus wren has the 1,803rd longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,786 bp
- GC skew (G − C) / (G + C)
- −0.377
- AT skew (A − T) / (A + T)
- +0.125
Life history
- Maximum lifespan
- 7.3 years
- Adult weight
- 38.9 g
- Birth weight
- 3.4 g
- Female sexual maturity
- 243 days
- Gestation or incubation
- 16 days
- Litter or clutch size
- 4
- Litters per year
- 3
- Postnatal growth rate
- 0.394 per day
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 01284)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,786 bp
Protein-coding11,378 bp
12S rRNA988 bp
16S rRNA1,594 bp
All tRNA1,535 bp
D-loop1,200 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 52.97% | −0.436 | +0.043 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 52.31% | −0.489 | +0.121 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 50.74% | −0.321 | +0.068 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 52.05% | −0.337 | +0.128 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.692 | +0.222 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 50.73% | −0.493 | +0.086 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 52.81% | −0.377 | +0.027 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 49.86% | −0.440 | +0.057 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.52% | −0.490 | +0.083 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 51.16% | −0.538 | +0.141 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 50.00% | −0.485 | +0.151 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 53.18% | −0.558 | +0.564 | |||||
| CYTBCytochrome b | 1,143 bp | 50.13% | −0.424 | +0.067 | |||||
| 12S rRNA12S ribosomal RNA | 988 bp | 48.99% | −0.120 | +0.190 | |||||
| 16S rRNA16S ribosomal RNA | 1,594 bp | 46.68% | −0.116 | +0.228 | |||||
| D-loopControl region (D-loop) | 1,200 bp | 45.08% | −0.394 | −0.005 |
Codon usage
Counts per codon, darker is more frequent3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.7%
UUU28
UUC189
Leu L17.6%
UUA29
UUG16
CUU29
CUC209
CUA296
CUG88
Ile I7.5%
AUU46
AUC237
Met M4.0%
AUA99
AUG51
Val V5.1%
GUU27
GUC88
GUA56
GUG24
Ser S7.6%
UCU23
UCC123
UCA76
UCG8
AGU7
AGC52
Pro P5.8%
CCU25
CCC104
CCA79
CCG14
Thr T8.3%
ACU28
ACC173
ACA100
ACG16
Ala A8.7%
GCU26
GCC187
GCA102
GCG14
Tyr Y3.0%
UAU20
UAC95
His H2.7%
CAU10
CAC94
Gln Q2.4%
CAA80
CAG11
Asn N3.3%
AAU12
AAC112
Lys K2.2%
AAA75
AAG9
Asp D1.8%
GAU13
GAC55
Glu E2.3%
GAA65
GAG24
Cys C0.8%
UGU4
UGC25
Trp W2.8%
UGA97
UGG11
Arg R2.0%
CGU3
CGC27
CGA41
CGG6
Gly G6.0%
GGU18
GGC87
GGA70
GGG54
Stop 0.3%
UAA5
UAG3
AGA1
AGG1
Genome map
38 annotated features in NC_029482.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (49.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 68 | 1,055 | 988 bp | + | 49.0% |
| tRNA-Val | Transfer RNA | 1,055 | 1,124 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,125 | 2,718 | 1,594 bp | + | 46.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,719 | 2,793 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,812 | 3,789 | 978 bp | + | 53.0% |
| tRNA-Ile | Transfer RNA | 3,804 | 3,876 | 73 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,883 | 3,953 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,953 | 4,021 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,022 | 5,061 | 1,040 bp | + | 52.3% |
| tRNA-Trp | Transfer RNA | 5,062 | 5,131 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,133 | 5,202 | 70 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,211 | 5,283 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,284 | 5,350 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,351 | 5,420 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,422 | 6,972 | 1,551 bp | + | 50.7% |
| tRNA-Ser (UCN) | Transfer RNA | 6,964 | 7,036 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,040 | 7,108 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,119 | 7,802 | 684 bp | + | 52.1% |
| tRNA-Lys | Transfer RNA | 7,804 | 7,870 | 67 bp | + | – |
| ATP8 | Protein-coding gene | 7,872 | 8,039 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,030 | 8,713 | 684 bp | + | 50.7% |
| COX3 | Protein-coding gene | 8,722 | 9,505 | 784 bp | + | 52.8% |
| tRNA-Gly | Transfer RNA | 9,506 | 9,574 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,575 | 9,925 | 351 bp | + | 49.9% |
| tRNA-Arg | Transfer RNA | 9,927 | 9,994 | 68 bp | + | – |
| ND4L | Protein-coding gene | 9,996 | 10,292 | 297 bp | + | 51.5% |
| ND4 | Protein-coding gene | 10,286 | 11,663 | 1,378 bp | + | 51.2% |
| tRNA-His | Transfer RNA | 11,664 | 11,733 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,735 | 11,799 | 65 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,799 | 11,869 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,870 | 13,687 | 1,818 bp | + | 50.0% |
| CYTB | Protein-coding gene | 13,697 | 14,839 | 1,143 bp | + | 50.1% |
| tRNA-Thr | Transfer RNA | 14,843 | 14,911 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,922 | 14,990 | 69 bp | − | – |
| ND6 | Protein-coding gene | 14,997 | 15,515 | 519 bp | − | 53.2% |
| tRNA-Glu | Transfer RNA | 15,516 | 15,586 | 71 bp | − | – |
| D-loop | Control region | 15,587 | 16,786 | 1,200 bp | – | 45.1% |