MitoAge

Capricornis crispus

Japanese serow

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Maximum lifespan
24 yr
AnAge record
mtDNA size
16,453 bp
RefSeq NC_012096.1
GC content
39.71%
Whole genome
Non-coding
1,080 bp
D-loop 1,022 bp

Where Japanese serow sits among 2,335 species

Whole-genome GC content against maximum lifespan. Japanese serow has the 685th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Japanese serow
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,453 bp
GC skew (G − C) / (G + C)
−0.345
AT skew (A − T) / (A + T)
+0.119

Life history

Maximum lifespan
24 years
Adult weight
80 kg
Birth weight
3.5 kg
Female sexual maturity
3 years
Male sexual maturity
3 years
Gestation or incubation
215 days
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01925)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,453 bp
Protein-coding11,351 bp
12S rRNA959 bp
16S rRNA1,568 bp
All tRNA1,502 bp
D-loop1,022 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp32.2%26.6%11.3%29.9%41.17%−0.452+0.094
ND2NADH dehydrogenase subunit 21,044 bp37.9%27.7%7.6%26.8%34.39%−0.560+0.156
COX1Cytochrome c oxidase subunit I1,545 bp28.9%28.8%16.2%26.1%42.33%−0.235+0.001
COX2Cytochrome c oxidase subunit II684 bp34.5%26.2%14.2%25.1%39.33%−0.279+0.137
ATP8ATP synthase F0 subunit 8201 bp40.3%26.9%8.0%24.9%32.84%−0.515+0.200
ATP6ATP synthase F0 subunit 6681 bp32.9%27.8%10.6%28.8%39.35%−0.463+0.085
COX3Cytochrome c oxidase subunit III784 bp26.5%26.9%14.8%31.8%46.56%−0.364−0.007
ND3NADH dehydrogenase subunit 3347 bp30.5%27.4%12.1%30.0%42.08%−0.425+0.055
ND4LNADH dehydrogenase subunit 4L297 bp31.6%33.0%11.8%23.6%35.35%−0.333−0.021
ND4NADH dehydrogenase subunit 41,378 bp32.4%27.8%10.4%29.4%39.77%−0.478+0.077
ND5NADH dehydrogenase subunit 51,830 bp34.3%27.1%9.9%28.7%38.58%−0.487+0.117
ND6NADH dehydrogenase subunit 6528 bp43.0%21.6%7.0%28.4%35.42%−0.604+0.331
CYTBCytochrome b1,140 bp31.8%24.6%13.0%30.6%43.60%−0.404+0.129
12S rRNA12S ribosomal RNA959 bp36.4%21.3%17.6%24.7%42.34%−0.167+0.262
16S rRNA16S ribosomal RNA1,568 bp37.9%23.3%17.0%21.8%38.78%−0.125+0.240
D-loopControl region (D-loop)1,022 bp30.9%29.2%14.9%25.0%39.92%−0.255+0.029

Codon usage

Counts per codon, darker is more frequent

3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU95
UUC145
Leu L15.7%
UUA99
UUG15
CUU66
CUC111
CUA272
CUG35
Ile I8.9%
AUU159
AUC181
Met M6.7%
AUA221
AUG35
Val V4.8%
GUU37
GUC44
GUA85
GUG17
Ser S7.2%
UCU38
UCC70
UCA109
UCG2
AGU17
AGC39
Pro P5.0%
CCU36
CCC69
CCA84
CCG3
Thr T8.8%
ACU57
ACC93
ACA172
ACG11
Ala A6.2%
GCU41
GCC82
GCA106
GCG6
Tyr Y3.5%
UAU64
UAC68
His H2.4%
CAU22
CAC71
Gln Q2.3%
CAA83
CAG5
Asn N4.3%
AAU50
AAC114
Lys K2.6%
AAA88
AAG10
Asp D1.8%
GAU25
GAC44
Glu E2.4%
GAA81
GAG12
Cys C0.6%
UGU5
UGC17
Trp W2.7%
UGA98
UGG5
Arg R1.7%
CGU7
CGC14
CGA39
CGG4
Gly G5.7%
GGU23
GGC65
GGA111
GGG17
Stop 0.3%
UAA7
UAG2
AGA1
AGG0

Genome map

38 annotated features in NC_012096.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,027959 bp+42.3%
tRNA-ValTransfer RNA1,0281,09467 bp+–
16S rRNARibosomal RNA1,0952,6621,568 bp+38.8%
tRNA-Leu (UUR)Transfer RNA2,6632,73775 bp+–
ND1Protein-coding gene2,7403,696957 bp+41.2%
tRNA-IleTransfer RNA3,6963,76469 bp+–
tRNA-GlnTransfer RNA3,7623,83372 bp−–
tRNA-MetTransfer RNA3,8363,90469 bp+–
ND2Protein-coding gene3,9054,9481,044 bp+34.4%
tRNA-TrpTransfer RNA4,9475,01367 bp+–
tRNA-AlaTransfer RNA5,0155,08369 bp−–
tRNA-AsnTransfer RNA5,0855,15773 bp−–
tRNA-CysTransfer RNA5,1915,25868 bp−–
tRNA-TyrTransfer RNA5,2585,32669 bp−–
COX1Protein-coding gene5,3286,8721,545 bp+42.3%
tRNA-Ser (UCN)Transfer RNA6,8706,94071 bp−–
tRNA-AspTransfer RNA6,9467,01368 bp+–
COX2Protein-coding gene7,0157,698684 bp+39.3%
tRNA-LysTransfer RNA7,7027,76867 bp+–
ATP8Protein-coding gene7,7707,970201 bp+32.8%
ATP6Protein-coding gene7,9318,611681 bp+39.4%
COX3Protein-coding gene8,6119,394784 bp+46.6%
tRNA-GlyTransfer RNA9,3959,46369 bp+–
ND3Protein-coding gene9,4649,810347 bp+42.1%
tRNA-ArgTransfer RNA9,8119,87969 bp+–
ND4LProtein-coding gene9,88010,176297 bp+35.4%
ND4Protein-coding gene10,17011,5471,378 bp+39.8%
tRNA-HisTransfer RNA11,54711,61771 bp+–
tRNA-Ser (AGY)Transfer RNA11,61811,67659 bp+–
tRNA-Leu (CUN)Transfer RNA11,67811,73861 bp+–
ND5Protein-coding gene11,73913,5681,830 bp+38.6%
ND6Protein-coding gene13,55214,079528 bp−35.4%
tRNA-GluTransfer RNA14,08014,14869 bp−–
CYTBProtein-coding gene14,15315,2921,140 bp+43.6%
tRNA-ThrTransfer RNA15,29615,36570 bp+–
tRNA-ProTransfer RNA15,36615,43166 bp−–
D-loopControl region15,43216,4531,022 bp–39.9%

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