MitoAge

Capricornis sumatraensis

Serow

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Maximum lifespan
18.5 yr
AnAge record
mtDNA size
16,441 bp
RefSeq NC_020629.1
GC content
39.72%
Whole genome
Non-coding
1,071 bp
D-loop 831 bp

Where Serow sits among 2,335 species

Whole-genome GC content against maximum lifespan. Serow has the 1,017th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Serow
  • This species
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  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,441 bp
GC skew (G − C) / (G + C)
−0.337
AT skew (A − T) / (A + T)
+0.113

Life history

Maximum lifespan
18.5 years
Adult weight
95 kg
Birth weight
3.5 kg
Female sexual maturity
2.5 years
Male sexual maturity
2.7 years
Gestation or incubation
213 days
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01926)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,441 bp
Protein-coding11,335 bp
12S rRNA959 bp
16S rRNA1,568 bp
All tRNA1,511 bp
D-loop831 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.9%27.0%11.3%29.8%41.11%−0.450+0.083
ND2NADH dehydrogenase subunit 21,042 bp37.9%27.7%7.5%26.9%34.36%−0.564+0.155
COX1Cytochrome c oxidase subunit I1,545 bp28.3%29.3%16.7%25.6%42.33%−0.211−0.017
COX2Cytochrome c oxidase subunit II684 bp33.9%26.3%14.6%25.1%39.77%−0.265+0.126
ATP8ATP synthase F0 subunit 8198 bp37.9%27.8%9.6%24.7%34.34%−0.441+0.154
ATP6ATP synthase F0 subunit 6681 bp33.0%28.6%10.6%27.8%38.33%−0.448+0.071
COX3Cytochrome c oxidase subunit III784 bp26.0%27.3%14.9%31.8%46.68%−0.361−0.024
ND3NADH dehydrogenase subunit 3346 bp30.3%27.7%11.6%30.3%41.91%−0.448+0.045
ND4LNADH dehydrogenase subunit 4L297 bp31.0%32.0%12.5%24.6%37.04%−0.327−0.016
ND4NADH dehydrogenase subunit 41,378 bp32.4%28.2%10.5%28.8%39.33%−0.465+0.069
ND5NADH dehydrogenase subunit 51,821 bp34.0%27.0%10.2%28.8%38.99%−0.479+0.114
ND6NADH dehydrogenase subunit 6528 bp43.4%21.6%6.8%28.2%35.04%−0.611+0.335
CYTBCytochrome b1,140 bp31.8%24.4%12.6%31.1%43.77%−0.423+0.133
12S rRNA12S ribosomal RNA959 bp36.4%21.1%17.7%24.8%42.54%−0.167+0.267
16S rRNA16S ribosomal RNA1,568 bp37.2%23.9%17.7%21.2%38.90%−0.092+0.219
D-loopControl region (D-loop)831 bp31.2%28.4%16.7%23.7%40.43%−0.173+0.046

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU103
UUC137
Leu L15.7%
UUA97
UUG14
CUU71
CUC109
CUA270
CUG36
Ile I8.8%
AUU168
AUC167
Met M6.8%
AUA219
AUG39
Val V4.6%
GUU43
GUC35
GUA81
GUG15
Ser S7.3%
UCU38
UCC73
UCA106
UCG2
AGU18
AGC41
Pro P5.1%
CCU37
CCC69
CCA81
CCG6
Thr T8.8%
ACU65
ACC90
ACA168
ACG12
Ala A6.3%
GCU42
GCC83
GCA113
GCG3
Tyr Y3.5%
UAU62
UAC70
His H2.5%
CAU26
CAC68
Gln Q2.3%
CAA81
CAG7
Asn N4.3%
AAU51
AAC111
Lys K2.6%
AAA87
AAG11
Asp D1.8%
GAU20
GAC48
Glu E2.4%
GAA72
GAG20
Cys C0.6%
UGU5
UGC17
Trp W2.7%
UGA98
UGG6
Arg R1.7%
CGU5
CGC15
CGA42
CGG2
Gly G5.7%
GGU25
GGC65
GGA102
GGG23
Stop 0.2%
UAA6
UAG1
AGA1
AGG0

Genome map

38 annotated features in NC_020629.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,027959 bp+42.5%
tRNA-ValTransfer RNA1,0281,09467 bp+–
16S rRNARibosomal RNA1,0952,6621,568 bp+38.9%
tRNA-Leu (UUR)Transfer RNA2,6632,73775 bp+–
ND1Protein-coding gene2,7403,695956 bp+41.1%
tRNA-IleTransfer RNA3,6963,76469 bp+–
tRNA-GlnTransfer RNA3,7623,83372 bp−–
tRNA-MetTransfer RNA3,8363,90469 bp+–
ND2Protein-coding gene3,9054,9461,042 bp+34.4%
tRNA-TrpTransfer RNA4,9475,01367 bp+–
tRNA-AlaTransfer RNA5,0155,08369 bp−–
tRNA-AsnTransfer RNA5,0855,15773 bp−–
tRNA-CysTransfer RNA5,1905,25768 bp−–
tRNA-TyrTransfer RNA5,2585,32568 bp−–
COX1Protein-coding gene5,3276,8711,545 bp+42.3%
tRNA-Ser (UCN)Transfer RNA6,8696,93971 bp−–
tRNA-AspTransfer RNA6,9457,01268 bp+–
COX2Protein-coding gene7,0147,697684 bp+39.8%
tRNA-LysTransfer RNA7,7017,76767 bp+–
ATP8Protein-coding gene7,7697,966198 bp+34.3%
ATP6Protein-coding gene7,9278,607681 bp+38.3%
COX3Protein-coding gene8,6079,390784 bp+46.7%
tRNA-GlyTransfer RNA9,3919,45969 bp+–
ND3Protein-coding gene9,4609,805346 bp+41.9%
tRNA-ArgTransfer RNA9,8069,87570 bp+–
ND4LProtein-coding gene9,87610,172297 bp+37.0%
ND4Protein-coding gene10,16611,5431,378 bp+39.3%
tRNA-HisTransfer RNA11,54411,61269 bp+–
tRNA-Ser (AGY)Transfer RNA11,61311,67260 bp+–
tRNA-Leu (CUN)Transfer RNA11,67411,74370 bp+–
ND5Protein-coding gene11,74413,5641,821 bp+39.0%
ND6Protein-coding gene13,54814,075528 bp−35.0%
tRNA-GluTransfer RNA14,07614,14469 bp−–
CYTBProtein-coding gene14,14915,2881,140 bp+43.8%
tRNA-ThrTransfer RNA15,29215,36271 bp+–
tRNA-ProTransfer RNA15,36215,42766 bp−–
D-loopControl region15,42816,258831 bp–40.4%

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