Carcharhinus brevipinna

Spinner shark

Maximum lifespan

19 yr

AnAge record

mtDNA size

16,706 bp

RefSeq NC_027081.1

GC content

38.53%

Whole genome

Non-coding

1,124 bp

D-loop 1,068 bp

Where Spinner shark sits among 2,335 species

Whole-genome GC content against maximum lifespan. Spinner shark has the 977th longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,706 bp

GC skew (G − C) / (G + C): −0.313
AT skew (A − T) / (A + T): +0.020

Life history

Maximum lifespan: 19 years
Adult weight: 49.3 kg
Female sexual maturity: 9 years
Litter or clutch size: 8.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01750)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,706 bp

Protein-coding11,407 bp

12S rRNA956 bp

16S rRNA1,670 bp

All tRNA1,549 bp

D-loop1,068 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Carcharhinus brevipinna genes

ND1NADH dehydrogenase subunit 1	975 bp	29.8%	31.5%	11.1%	27.6%	38.67%	−0.427	−0.027
ND2NADH dehydrogenase subunit 2	1,045 bp	31.9%	29.4%	8.9%	29.9%	38.76%	−0.541	+0.041
COX1Cytochrome c oxidase subunit I	1,557 bp	27.2%	34.4%	15.5%	22.9%	38.41%	−0.194	−0.116
COX2Cytochrome c oxidase subunit II	691 bp	32.1%	30.1%	14.5%	23.3%	37.77%	−0.234	+0.033
ATP8ATP synthase F0 subunit 8	168 bp	39.3%	31.5%	5.4%	23.8%	29.17%	−0.633	+0.109
ATP6ATP synthase F0 subunit 6	684 bp	31.9%	32.3%	9.6%	26.2%	35.82%	−0.461	−0.007
COX3Cytochrome c oxidase subunit III	786 bp	28.0%	30.5%	15.5%	26.0%	41.48%	−0.252	−0.043
ND3NADH dehydrogenase subunit 3	349 bp	26.4%	32.1%	14.0%	27.5%	41.55%	−0.324	−0.098
ND4LNADH dehydrogenase subunit 4L	297 bp	25.3%	33.3%	11.4%	30.0%	41.41%	−0.447	−0.138
ND4NADH dehydrogenase subunit 4	1,381 bp	30.3%	31.4%	10.4%	27.9%	38.31%	−0.456	−0.016
ND5NADH dehydrogenase subunit 5	1,830 bp	31.2%	30.5%	10.0%	28.3%	38.25%	−0.477	+0.011
ND6NADH dehydrogenase subunit 6	522 bp	41.8%	19.7%	8.0%	30.5%	38.51%	−0.582	+0.358
CYTBCytochrome b	1,145 bp	28.1%	31.2%	12.1%	28.6%	40.70%	−0.408	−0.052
12S rRNA12S ribosomal RNA	956 bp	33.8%	24.0%	18.6%	23.6%	42.26%	−0.119	+0.170
16S rRNA16S ribosomal RNA	1,670 bp	35.9%	27.0%	16.7%	20.4%	37.07%	−0.099	+0.142
D-loopControl region (D-loop)	1,068 bp	31.7%	35.1%	13.7%	19.5%	33.15%	−0.175	−0.050

Codon usage

Counts per codon, darker is more frequent

Gene

3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%

UUU109

UUC134

Leu L17.3%

UUA196

UUG16

CUU137

CUC129

CUA177

CUG5

Ile I9.1%

AUU200

AUC145

Met M4.4%

AUA140

AUG28

Val V4.4%

GUU58

GUC33

GUA73

GUG5

Ser S7.0%

UCU54

UCC57

UCA99

UCG4

AGU24

AGC30

Pro P5.6%

CCU65

CCC43

CCA105

CCG2

Thr T7.5%

ACU82

ACC82

ACA119

ACG1

Ala A7.3%

GCU87

GCC95

GCA92

GCG4

Tyr Y3.1%

UAU72

UAC46

His H2.7%

CAU49

CAC55

Gln Q2.5%

CAA92

CAG3

Asn N3.9%

AAU52

AAC97

Lys K2.2%

AAA85

AAG0

Asp D1.9%

GAU38

GAC35

Glu E2.6%

GAA94

GAG4

Cys C0.6%

UGU14

UGC9

Trp W3.2%

UGA119

UGG4

Arg R1.9%

CGU14

CGC14

CGA42

CGG3

Gly G6.0%

GGU64

GGC49

GGA100

GGG16

Stop 0.2%

UAA7

UAG0

AGA0

AGG1

Genome map

38 annotated features in NC_027081.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (38.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Carcharhinus brevipinna (NC_027081.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,025	956 bp	+	42.3%
tRNA-Val	Transfer RNA	1,026	1,097	72 bp	+	–
16S rRNA	Ribosomal RNA	1,098	2,767	1,670 bp	+	37.1%
tRNA-Leu (UUR)	Transfer RNA	2,768	2,842	75 bp	+	–
ND1	Protein-coding gene	2,843	3,817	975 bp	+	38.7%
tRNA-Ile	Transfer RNA	3,818	3,887	70 bp	+	–
tRNA-Gln	Transfer RNA	3,889	3,960	72 bp	−	–
tRNA-Met	Transfer RNA	3,960	4,028	69 bp	+	–
ND2	Protein-coding gene	4,029	5,073	1,045 bp	+	38.8%
tRNA-Trp	Transfer RNA	5,074	5,144	71 bp	+	–
tRNA-Ala	Transfer RNA	5,146	5,214	69 bp	−	–
tRNA-Asn	Transfer RNA	5,215	5,287	73 bp	−	–
tRNA-Cys	Transfer RNA	5,323	5,389	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,391	5,459	69 bp	−	–
COX1	Protein-coding gene	5,461	7,017	1,557 bp	+	38.4%
tRNA-Ser (UCN)	Transfer RNA	7,018	7,088	71 bp	−	–
tRNA-Asp	Transfer RNA	7,092	7,161	70 bp	+	–
COX2	Protein-coding gene	7,169	7,859	691 bp	+	37.8%
tRNA-Lys	Transfer RNA	7,860	7,933	74 bp	+	–
ATP8	Protein-coding gene	7,935	8,102	168 bp	+	29.2%
ATP6	Protein-coding gene	8,093	8,776	684 bp	+	35.8%
COX3	Protein-coding gene	8,776	9,561	786 bp	+	41.5%
tRNA-Gly	Transfer RNA	9,564	9,633	70 bp	+	–
ND3	Protein-coding gene	9,634	9,982	349 bp	+	41.6%
tRNA-Arg	Transfer RNA	9,983	10,052	70 bp	+	–
ND4L	Protein-coding gene	10,053	10,349	297 bp	+	41.4%
ND4	Protein-coding gene	10,343	11,723	1,381 bp	+	38.3%
tRNA-His	Transfer RNA	11,724	11,792	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,793	11,859	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,860	11,931	72 bp	+	–
ND5	Protein-coding gene	11,932	13,761	1,830 bp	+	38.3%
ND6	Protein-coding gene	13,757	14,278	522 bp	−	38.5%
tRNA-Glu	Transfer RNA	14,279	14,348	70 bp	−	–
CYTB	Protein-coding gene	14,351	15,495	1,145 bp	+	40.7%
tRNA-Thr	Transfer RNA	15,496	15,567	72 bp	+	–
tRNA-Pro	Transfer RNA	15,570	15,638	69 bp	−	–
D-loop	Control region	15,639	16,706	1,068 bp	–	33.2%