Carcharhinus plumbeus

Sandbar shark

Maximum lifespan

32 yr

AnAge record

mtDNA size

16,706 bp

RefSeq NC_024596.1

GC content

38.86%

Whole genome

Non-coding

1,119 bp

D-loop 1,063 bp

Where Sandbar shark sits among 2,335 species

Whole-genome GC content against maximum lifespan. Sandbar shark has the 389th longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,706 bp

GC skew (G − C) / (G + C): −0.314
AT skew (A − T) / (A + T): +0.022

Life history

Maximum lifespan: 32 years
Adult weight: 65 kg
Female sexual maturity: 14 years
Male sexual maturity: 14.3 years
Litter or clutch size: 7.9

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01759)

About this record

Lifespan source: AnAge build 15
Based on: an observed animal, origin not stated
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,706 bp

Protein-coding11,407 bp

12S rRNA956 bp

16S rRNA1,673 bp

All tRNA1,551 bp

D-loop1,063 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Carcharhinus plumbeus genes

ND1NADH dehydrogenase subunit 1	975 bp	29.7%	30.1%	11.6%	28.6%	40.21%	−0.423	−0.005
ND2NADH dehydrogenase subunit 2	1,045 bp	31.7%	27.9%	8.9%	31.5%	40.38%	−0.559	+0.063
COX1Cytochrome c oxidase subunit I	1,557 bp	27.7%	35.2%	15.3%	21.8%	37.06%	−0.175	−0.118
COX2Cytochrome c oxidase subunit II	691 bp	31.8%	30.0%	14.8%	23.4%	38.21%	−0.227	+0.030
ATP8ATP synthase F0 subunit 8	168 bp	38.1%	32.1%	6.5%	23.2%	29.76%	−0.560	+0.085
ATP6ATP synthase F0 subunit 6	684 bp	31.3%	32.0%	10.1%	26.6%	36.70%	−0.450	−0.012
COX3Cytochrome c oxidase subunit III	786 bp	28.2%	30.7%	15.3%	25.8%	41.09%	−0.257	−0.041
ND3NADH dehydrogenase subunit 3	349 bp	26.1%	33.2%	13.8%	26.9%	40.69%	−0.324	−0.121
ND4LNADH dehydrogenase subunit 4L	297 bp	24.9%	32.0%	11.8%	31.3%	43.10%	−0.453	−0.124
ND4NADH dehydrogenase subunit 4	1,381 bp	30.3%	30.8%	10.7%	28.2%	38.89%	−0.449	−0.009
ND5NADH dehydrogenase subunit 5	1,830 bp	30.9%	29.8%	10.1%	29.1%	39.24%	−0.485	+0.018
ND6NADH dehydrogenase subunit 6	522 bp	42.5%	19.3%	7.7%	30.5%	38.12%	−0.598	+0.375
CYTBCytochrome b	1,145 bp	27.7%	32.1%	12.5%	27.8%	40.26%	−0.380	−0.073
12S rRNA12S ribosomal RNA	956 bp	33.6%	24.1%	18.7%	23.6%	42.36%	−0.116	+0.165
16S rRNA16S ribosomal RNA	1,673 bp	36.2%	26.2%	16.4%	21.1%	37.54%	−0.124	+0.160
D-loopControl region (D-loop)	1,063 bp	31.1%	35.5%	13.5%	19.8%	33.40%	−0.189	−0.065

Codon usage

Counts per codon, darker is more frequent

Gene

3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU115

UUC126

Leu L17.5%

UUA194

UUG15

CUU132

CUC135

CUA182

CUG9

Ile I9.1%

AUU195

AUC153

Met M4.3%

AUA133

AUG29

Val V4.4%

GUU53

GUC33

GUA71

GUG10

Ser S7.0%

UCU57

UCC54

UCA100

UCG3

AGU27

AGC27

Pro P5.6%

CCU52

CCC53

CCA105

CCG4

Thr T7.5%

ACU68

ACC91

ACA125

ACG2

Ala A7.3%

GCU89

GCC95

GCA91

GCG3

Tyr Y3.1%

UAU75

UAC43

His H2.7%

CAU53

CAC51

Gln Q2.5%

CAA91

CAG3

Asn N3.9%

AAU52

AAC97

Lys K2.2%

AAA84

AAG1

Asp D1.9%

GAU36

GAC37

Glu E2.6%

GAA92

GAG6

Cys C0.6%

UGU16

UGC7

Trp W3.2%

UGA115

UGG8

Arg R1.9%

CGU11

CGC18

CGA42

CGG2

Gly G6.0%

GGU70

GGC45

GGA94

GGG20

Stop 0.2%

UAA7

UAG0

AGA0

AGG1

Genome map

38 annotated features in NC_024596.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (38.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Carcharhinus plumbeus (NC_024596.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	70	70 bp	+	–
12S rRNA	Ribosomal RNA	71	1,026	956 bp	+	42.4%
tRNA-Val	Transfer RNA	1,027	1,098	72 bp	+	–
16S rRNA	Ribosomal RNA	1,099	2,771	1,673 bp	+	37.5%
tRNA-Leu (UUR)	Transfer RNA	2,772	2,846	75 bp	+	–
ND1	Protein-coding gene	2,847	3,821	975 bp	+	40.2%
tRNA-Ile	Transfer RNA	3,822	3,891	70 bp	+	–
tRNA-Gln	Transfer RNA	3,893	3,963	71 bp	−	–
tRNA-Met	Transfer RNA	3,964	4,032	69 bp	+	–
ND2	Protein-coding gene	4,033	5,077	1,045 bp	+	40.4%
tRNA-Trp	Transfer RNA	5,078	5,148	71 bp	+	–
tRNA-Ala	Transfer RNA	5,150	5,218	69 bp	−	–
tRNA-Asn	Transfer RNA	5,219	5,291	73 bp	−	–
tRNA-Cys	Transfer RNA	5,327	5,394	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,396	5,464	69 bp	−	–
COX1	Protein-coding gene	5,466	7,022	1,557 bp	+	37.1%
tRNA-Ser (UCN)	Transfer RNA	7,023	7,093	71 bp	−	–
tRNA-Asp	Transfer RNA	7,097	7,166	70 bp	+	–
COX2	Protein-coding gene	7,174	7,864	691 bp	+	38.2%
tRNA-Lys	Transfer RNA	7,865	7,938	74 bp	+	–
ATP8	Protein-coding gene	7,940	8,107	168 bp	+	29.8%
ATP6	Protein-coding gene	8,098	8,781	684 bp	+	36.7%
COX3	Protein-coding gene	8,781	9,566	786 bp	+	41.1%
tRNA-Gly	Transfer RNA	9,569	9,638	70 bp	+	–
ND3	Protein-coding gene	9,639	9,987	349 bp	+	40.7%
tRNA-Arg	Transfer RNA	9,988	10,057	70 bp	+	–
ND4L	Protein-coding gene	10,058	10,354	297 bp	+	43.1%
ND4	Protein-coding gene	10,348	11,728	1,381 bp	+	38.9%
tRNA-His	Transfer RNA	11,729	11,797	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,798	11,864	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,865	11,936	72 bp	+	–
ND5	Protein-coding gene	11,937	13,766	1,830 bp	+	39.2%
ND6	Protein-coding gene	13,762	14,283	522 bp	−	38.1%
tRNA-Glu	Transfer RNA	14,284	14,353	70 bp	−	–
CYTB	Protein-coding gene	14,356	15,500	1,145 bp	+	40.3%
tRNA-Thr	Transfer RNA	15,501	15,572	72 bp	+	–
tRNA-Pro	Transfer RNA	15,575	15,643	69 bp	−	–
D-loop	Control region	15,644	16,706	1,063 bp	–	33.4%