Carcharhinus sorrah

Spot-tail shark

Maximum lifespan

8 yr

AnAge record

mtDNA size

16,707 bp

RefSeq NC_023521.1

GC content

38.95%

Whole genome

Non-coding

1,122 bp

D-loop 1,066 bp

Where Spot-tail shark sits among 2,335 species

Whole-genome GC content against maximum lifespan. Spot-tail shark has the 1,732nd longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,707 bp

GC skew (G − C) / (G + C): −0.324
AT skew (A − T) / (A + T): +0.030

Life history

Maximum lifespan: 8 years
Adult weight: 15.4 kg
Female sexual maturity: 2.5 years
Litter or clutch size: 3.1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01762)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,707 bp

Protein-coding11,407 bp

12S rRNA956 bp

16S rRNA1,671 bp

All tRNA1,551 bp

D-loop1,066 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Carcharhinus sorrah genes

ND1NADH dehydrogenase subunit 1	975 bp	30.3%	29.2%	11.1%	29.4%	40.51%	−0.453	+0.017
ND2NADH dehydrogenase subunit 2	1,045 bp	31.2%	28.5%	9.6%	30.7%	40.29%	−0.525	+0.045
COX1Cytochrome c oxidase subunit I	1,557 bp	27.5%	34.7%	15.4%	22.4%	37.83%	−0.185	−0.116
COX2Cytochrome c oxidase subunit II	691 bp	32.1%	31.0%	14.3%	22.6%	36.90%	−0.224	+0.018
ATP8ATP synthase F0 subunit 8	168 bp	38.7%	31.5%	5.4%	24.4%	29.76%	−0.640	+0.102
ATP6ATP synthase F0 subunit 6	684 bp	31.4%	31.3%	10.2%	27.0%	37.28%	−0.451	+0.002
COX3Cytochrome c oxidase subunit III	786 bp	28.1%	30.4%	15.6%	25.8%	41.48%	−0.245	−0.039
ND3NADH dehydrogenase subunit 3	349 bp	26.1%	31.5%	14.0%	28.4%	42.41%	−0.338	−0.095
ND4LNADH dehydrogenase subunit 4L	297 bp	24.9%	32.3%	11.8%	31.0%	42.76%	−0.449	−0.129
ND4NADH dehydrogenase subunit 4	1,381 bp	30.7%	30.4%	10.2%	28.7%	38.89%	−0.475	+0.005
ND5NADH dehydrogenase subunit 5	1,830 bp	31.4%	29.6%	9.8%	29.2%	39.02%	−0.496	+0.029
ND6NADH dehydrogenase subunit 6	522 bp	42.5%	18.0%	7.5%	32.0%	39.46%	−0.621	+0.405
CYTBCytochrome b	1,145 bp	28.3%	31.2%	11.8%	28.7%	40.52%	−0.418	−0.048
12S rRNA12S ribosomal RNA	956 bp	33.9%	23.7%	18.5%	23.8%	42.36%	−0.126	+0.176
16S rRNA16S ribosomal RNA	1,671 bp	36.0%	26.6%	16.5%	20.8%	37.34%	−0.115	+0.150
D-loopControl region (D-loop)	1,066 bp	32.0%	34.8%	13.2%	20.0%	33.21%	−0.203	−0.042

Codon usage

Counts per codon, darker is more frequent

Gene

3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU112

UUC129

Leu L17.3%

UUA186

UUG19

CUU125

CUC139

CUA184

CUG6

Ile I9.2%

AUU184

AUC167

Met M4.4%

AUA137

AUG29

Val V4.4%

GUU50

GUC35

GUA71

GUG10

Ser S7.1%

UCU50

UCC65

UCA98

UCG3

AGU19

AGC37

Pro P5.6%

CCU59

CCC46

CCA104

CCG5

Thr T7.4%

ACU74

ACC87

ACA121

ACG1

Ala A7.3%

GCU80

GCC98

GCA95

GCG4

Tyr Y3.1%

UAU80

UAC39

His H2.8%

CAU55

CAC50

Gln Q2.5%

CAA91

CAG3

Asn N3.9%

AAU52

AAC97

Lys K2.2%

AAA84

AAG0

Asp D1.9%

GAU36

GAC38

Glu E2.6%

GAA95

GAG3

Cys C0.6%

UGU14

UGC10

Trp W3.2%

UGA119

UGG4

Arg R1.9%

CGU14

CGC15

CGA42

CGG2

Gly G6.0%

GGU63

GGC49

GGA98

GGG18

Stop 0.2%

UAA7

UAG0

AGA0

AGG1

Genome map

38 annotated features in NC_023521.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (38.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Carcharhinus sorrah (NC_023521.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	70	70 bp	+	–
12S rRNA	Ribosomal RNA	71	1,026	956 bp	+	42.4%
tRNA-Val	Transfer RNA	1,027	1,098	72 bp	+	–
16S rRNA	Ribosomal RNA	1,099	2,769	1,671 bp	+	37.3%
tRNA-Leu (UUR)	Transfer RNA	2,770	2,844	75 bp	+	–
ND1	Protein-coding gene	2,845	3,819	975 bp	+	40.5%
tRNA-Ile	Transfer RNA	3,820	3,889	70 bp	+	–
tRNA-Gln	Transfer RNA	3,891	3,962	72 bp	−	–
tRNA-Met	Transfer RNA	3,962	4,030	69 bp	+	–
ND2	Protein-coding gene	4,031	5,075	1,045 bp	+	40.3%
tRNA-Trp	Transfer RNA	5,076	5,146	71 bp	+	–
tRNA-Ala	Transfer RNA	5,148	5,216	69 bp	−	–
tRNA-Asn	Transfer RNA	5,217	5,289	73 bp	−	–
tRNA-Cys	Transfer RNA	5,325	5,392	68 bp	−	–
tRNA-Tyr	Transfer RNA	5,394	5,462	69 bp	−	–
COX1	Protein-coding gene	5,464	7,020	1,557 bp	+	37.8%
tRNA-Ser (UCN)	Transfer RNA	7,021	7,091	71 bp	−	–
tRNA-Asp	Transfer RNA	7,095	7,164	70 bp	+	–
COX2	Protein-coding gene	7,172	7,862	691 bp	+	36.9%
tRNA-Lys	Transfer RNA	7,863	7,936	74 bp	+	–
ATP8	Protein-coding gene	7,938	8,105	168 bp	+	29.8%
ATP6	Protein-coding gene	8,096	8,779	684 bp	+	37.3%
COX3	Protein-coding gene	8,779	9,564	786 bp	+	41.5%
tRNA-Gly	Transfer RNA	9,567	9,636	70 bp	+	–
ND3	Protein-coding gene	9,637	9,985	349 bp	+	42.4%
tRNA-Arg	Transfer RNA	9,986	10,055	70 bp	+	–
ND4L	Protein-coding gene	10,056	10,352	297 bp	+	42.8%
ND4	Protein-coding gene	10,346	11,726	1,381 bp	+	38.9%
tRNA-His	Transfer RNA	11,727	11,795	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,796	11,862	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,863	11,934	72 bp	+	–
ND5	Protein-coding gene	11,935	13,764	1,830 bp	+	39.0%
ND6	Protein-coding gene	13,760	14,281	522 bp	−	39.5%
tRNA-Glu	Transfer RNA	14,282	14,351	70 bp	−	–
CYTB	Protein-coding gene	14,354	15,498	1,145 bp	+	40.5%
tRNA-Thr	Transfer RNA	15,499	15,570	72 bp	+	–
tRNA-Pro	Transfer RNA	15,573	15,641	69 bp	−	–
D-loop	Control region	15,642	16,707	1,066 bp	–	33.2%