MitoAge

Cervus elaphus

Red deer

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Maximum lifespan
31.5 yr
AnAge record
mtDNA size
16,357 bp
RefSeq NC_007704.2
GC content
37.79%
Whole genome
Non-coding
975 bp
D-loop 916 bp

Where Red deer sits among 2,335 species

Whole-genome GC content against maximum lifespan. Red deer has the 406th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Red deer
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,357 bp
GC skew (G − C) / (G + C)
−0.289
AT skew (A − T) / (A + T)
+0.072

Life history

Maximum lifespan
31.5 years
Adult weight
200 kg
Birth weight
10.1 kg
Basal metabolic rate
112.43 W
Body temperature
35.2 °C
Female sexual maturity
2.3 years
Male sexual maturity
2 years
Gestation or incubation
245 days
Litter or clutch size
1
Litters per year
0.9
Postnatal growth rate
0.006 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02020)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,357 bp
Protein-coding11,338 bp
12S rRNA957 bp
16S rRNA1,574 bp
All tRNA1,516 bp
D-loop916 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.0%29.7%12.7%26.7%39.33%−0.356+0.021
ND2NADH dehydrogenase subunit 21,042 bp36.6%28.8%8.9%25.7%34.65%−0.485+0.119
COX1Cytochrome c oxidase subunit I1,545 bp29.1%31.8%16.2%23.0%39.16%−0.174−0.045
COX2Cytochrome c oxidase subunit II684 bp34.8%28.5%14.2%22.5%36.70%−0.227+0.099
ATP8ATP synthase F0 subunit 8201 bp41.8%31.3%5.5%21.4%26.87%−0.593+0.143
ATP6ATP synthase F0 subunit 6681 bp31.6%30.7%11.6%26.1%37.74%−0.385+0.014
COX3Cytochrome c oxidase subunit III784 bp27.9%30.1%14.0%27.9%41.96%−0.331−0.037
ND3NADH dehydrogenase subunit 3346 bp30.9%30.6%11.8%26.6%38.44%−0.383+0.005
ND4LNADH dehydrogenase subunit 4L297 bp30.6%32.0%13.5%23.9%37.37%−0.279−0.022
ND4NADH dehydrogenase subunit 41,378 bp32.0%30.8%10.7%26.6%37.23%−0.427+0.020
ND5NADH dehydrogenase subunit 51,821 bp33.4%30.0%10.6%25.9%36.52%−0.420+0.054
ND6NADH dehydrogenase subunit 6528 bp39.8%22.7%8.1%29.4%37.50%−0.566+0.273
CYTBCytochrome b1,140 bp31.1%28.8%13.2%27.0%40.18%−0.345+0.038
12S rRNA12S ribosomal RNA957 bp36.7%23.1%17.9%22.4%40.23%−0.112+0.227
16S rRNA16S ribosomal RNA1,574 bp38.0%25.3%17.0%19.6%36.66%−0.071+0.200
D-loopControl region (D-loop)916 bp29.3%31.7%15.4%23.7%39.08%−0.212−0.039

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.6%
UUU137
UUC114
Leu L15.5%
UUA146
UUG14
CUU83
CUC80
CUA237
CUG28
Ile I8.7%
AUU204
AUC125
Met M6.9%
AUA220
AUG42
Val V5.2%
GUU48
GUC49
GUA84
GUG16
Ser S7.2%
UCU53
UCC61
UCA98
UCG8
AGU19
AGC36
Pro P5.0%
CCU41
CCC58
CCA85
CCG6
Thr T8.1%
ACU60
ACC69
ACA165
ACG12
Ala A6.4%
GCU47
GCC82
GCA105
GCG10
Tyr Y3.4%
UAU80
UAC51
His H2.4%
CAU35
CAC57
Gln Q2.4%
CAA89
CAG4
Asn N4.4%
AAU79
AAC89
Lys K2.5%
AAA89
AAG6
Asp D1.8%
GAU27
GAC40
Glu E2.6%
GAA80
GAG17
Cys C0.6%
UGU8
UGC14
Trp W2.7%
UGA94
UGG10
Arg R1.7%
CGU7
CGC14
CGA38
CGG4
Gly G5.7%
GGU33
GGC59
GGA99
GGG26
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_007704.2

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,026957 bp+40.2%
tRNA-ValTransfer RNA1,0271,09367 bp+–
16S rRNARibosomal RNA1,0942,6671,574 bp+36.7%
tRNA-Leu (UUR)Transfer RNA2,6682,74275 bp+–
ND1Protein-coding gene2,7453,700956 bp+39.3%
tRNA-IleTransfer RNA3,7013,76969 bp+–
tRNA-GlnTransfer RNA3,7673,83872 bp−–
tRNA-MetTransfer RNA3,8413,90969 bp+–
ND2Protein-coding gene3,9104,9511,042 bp+34.7%
tRNA-TrpTransfer RNA4,9525,01968 bp+–
tRNA-AlaTransfer RNA5,0235,09068 bp−–
tRNA-AsnTransfer RNA5,0925,16473 bp−–
tRNA-CysTransfer RNA5,1975,26468 bp−–
tRNA-TyrTransfer RNA5,2655,33268 bp−–
COX1Protein-coding gene5,3366,8801,545 bp+39.2%
tRNA-Ser (UCN)Transfer RNA6,8786,94871 bp−–
tRNA-AspTransfer RNA6,9547,02168 bp+–
COX2Protein-coding gene7,0237,706684 bp+36.7%
tRNA-LysTransfer RNA7,7107,77768 bp+–
ATP8Protein-coding gene7,7797,979201 bp+26.9%
ATP6Protein-coding gene7,9408,620681 bp+37.7%
COX3Protein-coding gene8,6209,403784 bp+42.0%
tRNA-GlyTransfer RNA9,4049,47269 bp+–
ND3Protein-coding gene9,4739,818346 bp+38.4%
tRNA-ArgTransfer RNA9,8209,88869 bp+–
ND4LProtein-coding gene9,88910,185297 bp+37.4%
ND4Protein-coding gene10,17911,5561,378 bp+37.2%
tRNA-HisTransfer RNA11,55711,62569 bp+–
tRNA-Ser (AGY)Transfer RNA11,62611,68560 bp+–
tRNA-Leu (CUN)Transfer RNA11,68711,75670 bp+–
ND5Protein-coding gene11,75713,5771,821 bp+36.5%
ND6Protein-coding gene13,56114,088528 bp−37.5%
tRNA-GluTransfer RNA14,08914,15971 bp−–
CYTBProtein-coding gene14,16215,3011,140 bp+40.2%
tRNA-ThrTransfer RNA15,30415,37572 bp+–
tRNA-ProTransfer RNA15,37415,44168 bp−–
D-loopControl region15,44216,357916 bp–39.1%

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