MitoAge

Cervus nippon

Sika deer

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Maximum lifespan
26.3 yr
AnAge record
mtDNA size
16,429 bp
RefSeq NC_016178.1
GC content
38.00%
Whole genome
Non-coding
1,047 bp
D-loop 990 bp

Where Sika deer sits among 2,335 species

Whole-genome GC content against maximum lifespan. Sika deer has the 576th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Sika deer
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,429 bp
GC skew (G − C) / (G + C)
−0.293
AT skew (A − T) / (A + T)
+0.075

Life history

Maximum lifespan
26.3 years
Adult weight
42 kg
Birth weight
5.8 kg
Body temperature
39.8 °C
Female sexual maturity
500 days
Male sexual maturity
500 days
Gestation or incubation
210 days
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02021)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,429 bp
Protein-coding11,339 bp
12S rRNA956 bp
16S rRNA1,573 bp
All tRNA1,518 bp
D-loop990 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.5%29.0%12.1%27.4%39.54%−0.386+0.042
ND2NADH dehydrogenase subunit 21,042 bp36.9%28.3%8.6%26.1%34.74%−0.503+0.132
COX1Cytochrome c oxidase subunit I1,545 bp28.9%31.4%16.1%23.6%39.68%−0.188−0.041
COX2Cytochrome c oxidase subunit II684 bp34.5%29.2%14.3%21.9%36.26%−0.210+0.083
ATP8ATP synthase F0 subunit 8201 bp39.8%31.8%7.5%20.9%28.36%−0.474+0.111
ATP6ATP synthase F0 subunit 6681 bp32.2%30.7%11.2%26.0%37.15%−0.399+0.023
COX3Cytochrome c oxidase subunit III784 bp27.7%30.1%14.4%27.8%42.22%−0.317−0.042
ND3NADH dehydrogenase subunit 3347 bp31.1%30.3%12.1%26.5%38.62%−0.373+0.014
ND4LNADH dehydrogenase subunit 4L297 bp31.0%33.7%13.1%22.2%35.35%−0.257−0.042
ND4NADH dehydrogenase subunit 41,378 bp31.6%31.1%11.0%26.4%37.37%−0.414+0.008
ND5NADH dehydrogenase subunit 51,821 bp33.6%29.2%10.4%26.9%37.29%−0.443+0.070
ND6NADH dehydrogenase subunit 6528 bp39.8%22.3%8.7%29.2%37.88%−0.540+0.280
CYTBCytochrome b1,140 bp31.0%28.1%13.2%27.8%40.97%−0.358+0.049
12S rRNA12S ribosomal RNA956 bp36.7%22.5%17.7%23.1%40.80%−0.133+0.240
16S rRNA16S ribosomal RNA1,573 bp38.1%24.7%17.0%20.1%37.13%−0.082+0.213
D-loopControl region (D-loop)990 bp29.8%32.8%15.7%21.7%37.37%−0.162−0.048

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.7%
UUU140
UUC115
Leu L15.4%
UUA136
UUG15
CUU78
CUC80
CUA246
CUG30
Ile I8.8%
AUU195
AUC139
Met M6.9%
AUA216
AUG45
Val V4.9%
GUU50
GUC40
GUA84
GUG14
Ser S7.3%
UCU49
UCC66
UCA97
UCG9
AGU18
AGC37
Pro P5.0%
CCU44
CCC56
CCA84
CCG6
Thr T8.2%
ACU63
ACC69
ACA169
ACG9
Ala A6.4%
GCU49
GCC82
GCA107
GCG6
Tyr Y3.4%
UAU72
UAC58
His H2.4%
CAU35
CAC58
Gln Q2.4%
CAA86
CAG7
Asn N4.4%
AAU80
AAC88
Lys K2.5%
AAA89
AAG6
Asp D1.7%
GAU23
GAC43
Glu E2.6%
GAA80
GAG17
Cys C0.6%
UGU4
UGC18
Trp W2.7%
UGA94
UGG10
Arg R1.7%
CGU8
CGC13
CGA37
CGG5
Gly G5.7%
GGU34
GGC60
GGA94
GGG29
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_016178.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,025956 bp+40.8%
tRNA-ValTransfer RNA1,0261,09368 bp+–
16S rRNARibosomal RNA1,0932,6651,573 bp+37.1%
tRNA-Leu (UUR)Transfer RNA2,6662,74075 bp+–
ND1Protein-coding gene2,7433,698956 bp+39.5%
tRNA-IleTransfer RNA3,6993,76769 bp+–
tRNA-GlnTransfer RNA3,7653,83672 bp−–
tRNA-MetTransfer RNA3,8393,90769 bp+–
ND2Protein-coding gene3,9084,9491,042 bp+34.7%
tRNA-TrpTransfer RNA4,9505,01768 bp+–
tRNA-AlaTransfer RNA5,0215,08868 bp−–
tRNA-AsnTransfer RNA5,0905,16273 bp−–
tRNA-CysTransfer RNA5,1955,26268 bp−–
tRNA-TyrTransfer RNA5,2635,33169 bp−–
COX1Protein-coding gene5,3346,8781,545 bp+39.7%
tRNA-Ser (UCN)Transfer RNA6,8766,94671 bp−–
tRNA-AspTransfer RNA6,9527,01968 bp+–
COX2Protein-coding gene7,0217,704684 bp+36.3%
tRNA-LysTransfer RNA7,7087,77568 bp+–
ATP8Protein-coding gene7,7777,977201 bp+28.4%
ATP6Protein-coding gene7,9388,618681 bp+37.2%
COX3Protein-coding gene8,6189,401784 bp+42.2%
tRNA-GlyTransfer RNA9,4029,47069 bp+–
ND3Protein-coding gene9,4719,817347 bp+38.6%
tRNA-ArgTransfer RNA9,8189,88669 bp+–
ND4LProtein-coding gene9,88710,183297 bp+35.4%
ND4Protein-coding gene10,17711,5541,378 bp+37.4%
tRNA-HisTransfer RNA11,55511,62369 bp+–
tRNA-Ser (AGY)Transfer RNA11,62411,68360 bp+–
tRNA-Leu (CUN)Transfer RNA11,68511,75470 bp+–
ND5Protein-coding gene11,75513,5751,821 bp+37.3%
ND6Protein-coding gene13,55914,086528 bp−37.9%
tRNA-GluTransfer RNA14,08714,15771 bp−–
CYTBProtein-coding gene14,16015,2991,140 bp+41.0%
tRNA-ThrTransfer RNA15,30215,37372 bp+–
tRNA-ProTransfer RNA15,37215,43968 bp−–
D-loopControl region15,44016,429990 bp–37.4%

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