MitoAge

Damaliscus lunatus

Topi

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Maximum lifespan
35 yr
AnAge record
mtDNA size
16,419 bp
RefSeq NC_023543.1
GC content
41.35%
Whole genome
Non-coding
1,052 bp
D-loop 989 bp

Where Topi sits among 2,335 species

Whole-genome GC content against maximum lifespan. Topi has the 333rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Topi
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,419 bp
GC skew (G − C) / (G + C)
−0.306
AT skew (A − T) / (A + T)
+0.114

Life history

Maximum lifespan
35 years
Adult weight
110 kg
Birth weight
11.1 kg
Female sexual maturity
639 days
Gestation or incubation
238 days
Litter or clutch size
1
Litters per year
0.6

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01938)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,419 bp
Protein-coding11,332 bp
12S rRNA954 bp
16S rRNA1,570 bp
All tRNA1,514 bp
D-loop989 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp30.1%27.7%13.3%28.9%42.16%−0.370+0.042
ND2NADH dehydrogenase subunit 21,042 bp36.3%27.0%9.4%27.4%36.76%−0.488+0.147
COX1Cytochrome c oxidase subunit I1,545 bp27.6%28.0%17.6%26.7%44.34%−0.206−0.007
COX2Cytochrome c oxidase subunit II684 bp34.5%25.7%15.1%24.7%39.77%−0.243+0.146
ATP8ATP synthase F0 subunit 8201 bp38.3%27.4%8.5%25.9%34.33%−0.507+0.167
ATP6ATP synthase F0 subunit 6681 bp30.7%25.7%12.8%30.8%43.61%−0.414+0.089
COX3Cytochrome c oxidase subunit III784 bp26.7%27.8%15.1%30.5%45.54%−0.339−0.021
ND3NADH dehydrogenase subunit 3346 bp31.5%26.3%11.8%30.3%42.20%−0.438+0.090
ND4LNADH dehydrogenase subunit 4L297 bp29.6%29.3%12.8%28.3%41.08%−0.377+0.006
ND4NADH dehydrogenase subunit 41,378 bp29.8%27.6%12.6%30.0%42.53%−0.410+0.038
ND5NADH dehydrogenase subunit 51,815 bp32.0%26.6%11.7%29.8%41.43%−0.436+0.093
ND6NADH dehydrogenase subunit 6528 bp42.8%18.4%7.4%31.4%38.83%−0.620+0.399
CYTBCytochrome b1,140 bp30.4%24.7%14.3%30.6%44.91%−0.363+0.102
12S rRNA12S ribosomal RNA954 bp36.4%21.6%18.6%23.5%42.03%−0.117+0.255
16S rRNA16S ribosomal RNA1,570 bp37.2%23.3%18.3%21.1%39.49%−0.071+0.229
D-loopControl region (D-loop)989 bp32.2%26.5%16.3%25.1%41.36%−0.213+0.097

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU105
UUC133
Leu L15.8%
UUA72
UUG24
CUU59
CUC117
CUA281
CUG48
Ile I8.5%
AUU160
AUC161
Met M6.8%
AUA185
AUG75
Val V5.1%
GUU39
GUC57
GUA74
GUG22
Ser S7.3%
UCU27
UCC87
UCA101
UCG7
AGU16
AGC40
Pro P5.0%
CCU32
CCC72
CCA72
CCG15
Thr T8.3%
ACU43
ACC100
ACA159
ACG15
Ala A6.6%
GCU29
GCC97
GCA112
GCG14
Tyr Y3.4%
UAU64
UAC64
His H2.6%
CAU25
CAC72
Gln Q2.3%
CAA73
CAG16
Asn N4.2%
AAU55
AAC105
Lys K2.5%
AAA83
AAG12
Asp D1.8%
GAU23
GAC44
Glu E2.5%
GAA70
GAG25
Cys C0.6%
UGU5
UGC19
Trp W2.7%
UGA89
UGG15
Arg R1.7%
CGU5
CGC15
CGA39
CGG4
Gly G5.7%
GGU29
GGC64
GGA89
GGG35
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_023543.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,022954 bp+42.0%
tRNA-ValTransfer RNA1,0231,08967 bp+–
16S rRNARibosomal RNA1,0902,6591,570 bp+39.5%
tRNA-Leu (UUR)Transfer RNA2,6602,73475 bp+–
ND1Protein-coding gene2,7373,692956 bp+42.2%
tRNA-IleTransfer RNA3,6933,76169 bp+–
tRNA-GlnTransfer RNA3,7593,83072 bp−–
tRNA-MetTransfer RNA3,8333,90169 bp+–
ND2Protein-coding gene3,9024,9431,042 bp+36.8%
tRNA-TrpTransfer RNA4,9445,01067 bp+–
tRNA-AlaTransfer RNA5,0125,08069 bp−–
tRNA-AsnTransfer RNA5,0825,15473 bp−–
tRNA-CysTransfer RNA5,1875,25468 bp−–
tRNA-TyrTransfer RNA5,2555,32268 bp−–
COX1Protein-coding gene5,3246,8681,545 bp+44.3%
tRNA-Ser (UCN)Transfer RNA6,8666,93671 bp−–
tRNA-AspTransfer RNA6,9427,00968 bp+–
COX2Protein-coding gene7,0117,694684 bp+39.8%
tRNA-LysTransfer RNA7,6987,76568 bp+–
ATP8Protein-coding gene7,7677,967201 bp+34.3%
ATP6Protein-coding gene7,9288,608681 bp+43.6%
COX3Protein-coding gene8,6089,391784 bp+45.5%
tRNA-GlyTransfer RNA9,3929,46069 bp+–
ND3Protein-coding gene9,4619,806346 bp+42.2%
tRNA-ArgTransfer RNA9,8079,87670 bp+–
ND4LProtein-coding gene9,87710,173297 bp+41.1%
ND4Protein-coding gene10,16711,5441,378 bp+42.5%
tRNA-HisTransfer RNA11,54511,61470 bp+–
tRNA-Ser (AGY)Transfer RNA11,61511,67460 bp+–
tRNA-Leu (CUN)Transfer RNA11,67611,74570 bp+–
ND5Protein-coding gene11,75213,5661,815 bp+41.4%
ND6Protein-coding gene13,55014,077528 bp−38.8%
tRNA-GluTransfer RNA14,07814,14669 bp−–
CYTBProtein-coding gene14,15115,2901,140 bp+44.9%
tRNA-ThrTransfer RNA15,29415,36370 bp+–
tRNA-ProTransfer RNA15,36315,43068 bp−–
D-loopControl region15,43116,419989 bp–41.4%

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