Daphoenositta chrysoptera
Varied sittella
GC content
42.65%
Whole genome
Non-coding
1,423 bp
Including the D-loop
Where Varied sittella sits among 2,335 species
Whole-genome GC content against maximum lifespan. Varied sittella has the 1,875th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,915 bp
- GC skew (G − C) / (G + C)
- −0.340
- AT skew (A − T) / (A + T)
- +0.090
Life history
- Maximum lifespan
- 6.9 years
- Adult weight
- 11.7 g
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 01078)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,915 bp
Protein-coding11,377 bp
12S rRNA984 bp
16S rRNA1,600 bp
All tRNA1,543 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 43.25% | −0.437 | −0.002 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,041 bp | 39.67% | −0.516 | +0.111 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.97% | −0.276 | +0.043 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 43.28% | −0.304 | +0.067 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 38.69% | −0.662 | +0.087 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.50% | −0.523 | +0.057 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.99% | −0.346 | +0.061 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 40.46% | −0.423 | +0.033 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 42.76% | −0.417 | −0.035 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 42.74% | −0.511 | +0.100 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,815 bp | 42.87% | −0.468 | +0.099 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 45.67% | −0.451 | +0.404 | |||||
| CYTBCytochrome b | 1,143 bp | 44.62% | −0.396 | +0.065 | |||||
| 12S rRNA12S ribosomal RNA | 984 bp | 47.26% | −0.097 | +0.171 | |||||
| 16S rRNA16S ribosomal RNA | 1,600 bp | 42.56% | −0.046 | +0.199 |
Codon usage
Counts per codon, darker is more frequent3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU61
UUC164
Leu L16.9%
UUA80
UUG0
CUU84
CUC98
CUA348
CUG33
Ile I8.0%
AUU111
AUC193
Met M4.7%
AUA145
AUG32
Val V5.3%
GUU46
GUC49
GUA89
GUG18
Ser S7.5%
UCU59
UCC66
UCA100
UCG2
AGU8
AGC50
Pro P5.9%
CCU59
CCC47
CCA117
CCG2
Thr T8.3%
ACU81
ACC101
ACA132
ACG2
Ala A7.8%
GCU86
GCC104
GCA97
GCG9
Tyr Y2.9%
UAU28
UAC83
His H2.8%
CAU29
CAC77
Gln Q2.5%
CAA91
CAG5
Asn N3.4%
AAU40
AAC88
Lys K2.3%
AAA86
AAG1
Asp D1.7%
GAU24
GAC42
Glu E2.4%
GAA78
GAG12
Cys C0.8%
UGU5
UGC25
Trp W2.8%
UGA104
UGG1
Arg R1.9%
CGU8
CGC13
CGA45
CGG7
Gly G5.8%
GGU29
GGC54
GGA110
GGG28
Stop 0.3%
UAA7
UAG1
AGA2
AGG1
Genome map
37 annotated features in NC_053096.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,052 | 984 bp | + | 47.3% |
| tRNA-Val | Transfer RNA | 1,052 | 1,119 | 68 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,120 | 2,719 | 1,600 bp | + | 42.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,720 | 2,794 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,807 | 3,784 | 978 bp | + | 43.3% |
| tRNA-Ile | Transfer RNA | 3,795 | 3,866 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,874 | 3,944 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,944 | 4,012 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,013 | 5,053 | 1,041 bp | + | 39.7% |
| tRNA-Trp | Transfer RNA | 5,055 | 5,124 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,126 | 5,194 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,207 | 5,279 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,284 | 5,350 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,351 | 5,420 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,422 | 6,972 | 1,551 bp | + | 44.0% |
| tRNA-Ser (UCN) | Transfer RNA | 6,964 | 7,038 | 75 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,044 | 7,112 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,125 | 7,808 | 684 bp | + | 43.3% |
| tRNA-Lys | Transfer RNA | 7,810 | 7,879 | 70 bp | + | – |
| ATP8 | Protein-coding gene | 7,881 | 8,048 | 168 bp | + | 38.7% |
| ATP6 | Protein-coding gene | 8,039 | 8,722 | 684 bp | + | 40.5% |
| COX3 | Protein-coding gene | 8,730 | 9,514 | 785 bp | + | 46.0% |
| tRNA-Gly | Transfer RNA | 9,514 | 9,582 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,583 | 9,933 | 351 bp | + | 40.5% |
| tRNA-Arg | Transfer RNA | 9,935 | 10,004 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,006 | 10,302 | 297 bp | + | 42.8% |
| ND4 | Protein-coding gene | 10,296 | 11,673 | 1,378 bp | + | 42.7% |
| tRNA-His | Transfer RNA | 11,674 | 11,743 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,744 | 11,810 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,811 | 11,881 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,882 | 13,696 | 1,815 bp | + | 42.9% |
| CYTB | Protein-coding gene | 13,706 | 14,848 | 1,143 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 14,853 | 14,920 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,927 | 14,996 | 70 bp | − | – |
| ND6 | Protein-coding gene | 15,007 | 15,525 | 519 bp | − | 45.7% |
| tRNA-Glu | Transfer RNA | 15,527 | 15,598 | 72 bp | − | – |