Dasyatis pastinaca

Common stingray

Maximum lifespan

21 yr

AnAge record

mtDNA size

17,713 bp

RefSeq NC_057976.1

GC content

40.47%

Whole genome

Non-coding

2,072 bp

D-loop 1,982 bp

Where Common stingray sits among 2,335 species

Whole-genome GC content against maximum lifespan. Common stingray has the 854th longest lifespan of them.

This species
Other sharks and rays
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,713 bp

GC skew (G − C) / (G + C): −0.357
AT skew (A − T) / (A + T): +0.054

Life history

Maximum lifespan: 21 years
Female sexual maturity: 3.7 years
Litter or clutch size: 6.2

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 01805)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome17,713 bp

Protein-coding11,428 bp

12S rRNA961 bp

16S rRNA1,695 bp

All tRNA1,557 bp

D-loop1,982 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Dasyatis pastinaca genes

ND1NADH dehydrogenase subunit 1	978 bp	29.1%	27.9%	11.5%	31.5%	42.95%	−0.467	+0.022
ND2NADH dehydrogenase subunit 2	1,045 bp	32.5%	27.5%	8.0%	32.0%	40.00%	−0.598	+0.085
COX1Cytochrome c oxidase subunit I	1,557 bp	27.6%	31.4%	16.0%	25.0%	41.04%	−0.221	−0.065
COX2Cytochrome c oxidase subunit II	691 bp	30.5%	28.1%	15.3%	26.0%	41.39%	−0.259	+0.042
ATP8ATP synthase F0 subunit 8	168 bp	35.7%	28.6%	8.3%	27.4%	35.71%	−0.533	+0.111
ATP6ATP synthase F0 subunit 6	684 bp	29.4%	29.8%	10.4%	30.4%	40.79%	−0.491	−0.007
COX3Cytochrome c oxidase subunit III	786 bp	26.2%	28.8%	15.1%	29.9%	45.04%	−0.328	−0.046
ND3NADH dehydrogenase subunit 3	349 bp	25.5%	29.8%	12.3%	32.4%	44.70%	−0.449	−0.078
ND4LNADH dehydrogenase subunit 4L	297 bp	25.3%	31.6%	10.8%	32.3%	43.10%	−0.500	−0.112
ND4NADH dehydrogenase subunit 4	1,381 bp	29.9%	27.8%	10.6%	31.6%	42.29%	−0.497	+0.036
ND5NADH dehydrogenase subunit 5	1,848 bp	31.6%	28.5%	9.4%	30.6%	39.94%	−0.531	+0.052
ND6NADH dehydrogenase subunit 6	522 bp	40.8%	18.2%	9.2%	31.8%	41.00%	−0.551	+0.383
CYTBCytochrome b	1,143 bp	27.7%	29.2%	11.2%	31.8%	43.05%	−0.480	−0.026
12S rRNA12S ribosomal RNA	961 bp	33.2%	23.4%	18.3%	25.1%	43.39%	−0.156	+0.173
16S rRNA16S ribosomal RNA	1,695 bp	36.0%	24.9%	16.8%	22.4%	39.12%	−0.143	+0.182
D-loopControl region (D-loop)	1,982 bp	33.1%	31.4%	12.9%	22.5%	35.42%	−0.271	+0.027

Codon usage

Counts per codon, darker is more frequent

Gene

3,815 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU95

UUC145

Leu L17.5%

UUA122

UUG14

CUU123

CUC166

CUA235

CUG9

Ile I8.9%

AUU185

AUC154

Met M4.6%

AUA142

AUG32

Val V4.4%

GUU54

GUC40

GUA56

GUG16

Ser S7.1%

UCU48

UCC78

UCA89

UCG3

AGU21

AGC31

Pro P5.6%

CCU36

CCC76

CCA97

CCG4

Thr T8.2%

ACU51

ACC127

ACA129

ACG6

Ala A7.0%

GCU50

GCC120

GCA93

GCG4

Tyr Y3.0%

UAU57

UAC58

His H2.6%

CAU45

CAC56

Gln Q2.7%

CAA97

CAG5

Asn N4.0%

AAU55

AAC96

Lys K2.1%

AAA78

AAG4

Asp D1.8%

GAU31

GAC38

Glu E2.5%

GAA91

GAG6

Cys C0.6%

UGU10

UGC14

Trp W3.2%

UGA117

UGG5

Arg R1.9%

CGU10

CGC20

CGA38

CGG3

Gly G5.8%

GGU49

GGC74

GGA76

GGG22

Stop 0.2%

UAA8

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_057976.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (40.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Dasyatis pastinaca (NC_057976.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,030	961 bp	+	43.4%
tRNA-Val	Transfer RNA	1,031	1,102	72 bp	+	–
16S rRNA	Ribosomal RNA	1,103	2,797	1,695 bp	+	39.1%
tRNA-Leu (UUR)	Transfer RNA	2,798	2,872	75 bp	+	–
ND1	Protein-coding gene	2,874	3,851	978 bp	+	43.0%
tRNA-Ile	Transfer RNA	3,854	3,923	70 bp	+	–
tRNA-Gln	Transfer RNA	3,927	3,998	72 bp	−	–
tRNA-Met	Transfer RNA	3,999	4,068	70 bp	+	–
ND2	Protein-coding gene	4,069	5,113	1,045 bp	+	40.0%
tRNA-Trp	Transfer RNA	5,114	5,183	70 bp	+	–
tRNA-Ala	Transfer RNA	5,186	5,254	69 bp	−	–
tRNA-Asn	Transfer RNA	5,256	5,328	73 bp	−	–
tRNA-Cys	Transfer RNA	5,365	5,431	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,438	5,507	70 bp	−	–
COX1	Protein-coding gene	5,509	7,065	1,557 bp	+	41.0%
tRNA-Ser (UCN)	Transfer RNA	7,069	7,139	71 bp	−	–
tRNA-Asp	Transfer RNA	7,140	7,210	71 bp	+	–
COX2	Protein-coding gene	7,214	7,904	691 bp	+	41.4%
tRNA-Lys	Transfer RNA	7,905	7,979	75 bp	+	–
ATP8	Protein-coding gene	7,981	8,148	168 bp	+	35.7%
ATP6	Protein-coding gene	8,139	8,822	684 bp	+	40.8%
COX3	Protein-coding gene	8,823	9,608	786 bp	+	45.0%
tRNA-Gly	Transfer RNA	9,614	9,685	72 bp	+	–
ND3	Protein-coding gene	9,686	10,034	349 bp	+	44.7%
tRNA-Arg	Transfer RNA	10,035	10,105	71 bp	+	–
ND4L	Protein-coding gene	10,106	10,402	297 bp	+	43.1%
ND4	Protein-coding gene	10,396	11,776	1,381 bp	+	42.3%
tRNA-His	Transfer RNA	11,777	11,845	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,847	11,913	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,916	11,987	72 bp	+	–
ND5	Protein-coding gene	11,988	13,835	1,848 bp	+	39.9%
ND6	Protein-coding gene	13,832	14,353	522 bp	−	41.0%
tRNA-Glu	Transfer RNA	14,355	14,423	69 bp	−	–
CYTB	Protein-coding gene	14,431	15,573	1,143 bp	+	43.1%
tRNA-Thr	Transfer RNA	15,580	15,653	74 bp	+	–
tRNA-Pro	Transfer RNA	15,663	15,731	69 bp	−	–
D-loop	Control region	15,732	17,713	1,982 bp	–	35.4%