Dermophis mexicanus
Mexican burrowing caecilian
GC content
31.62%
Whole genome
Non-coding
841 bp
D-loop 630 bp
Where Mexican burrowing caecilian sits among 2,335 species
Whole-genome GC content against maximum lifespan. Mexican burrowing caecilian has the 1,320th longest lifespan of them.
- This species
- Other amphibians
- Other classes
Base composition
Whole genome16,162 bp
- GC skew (G − C) / (G + C)
- −0.277
- AT skew (A − T) / (A + T)
- +0.080
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,162 bp
Protein-coding11,281 bp
12S rRNA943 bp
16S rRNA1,576 bp
All tRNA1,534 bp
D-loop630 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 963 bp | 30.74% | −0.318 | +0.058 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,036 bp | 29.73% | −0.448 | +0.118 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 33.98% | −0.098 | −0.058 | |||||
| COX2Cytochrome c oxidase subunit II | 689 bp | 33.24% | −0.258 | +0.091 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 24.85% | −0.707 | +0.306 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 30.26% | −0.430 | +0.019 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 34.95% | −0.161 | −0.051 | |||||
| ND3NADH dehydrogenase subunit 3 | 344 bp | 33.14% | −0.351 | +0.043 | |||||
| ND4LNADH dehydrogenase subunit 4L | 291 bp | 35.05% | −0.275 | −0.005 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,372 bp | 29.96% | −0.416 | +0.032 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,782 bp | 28.45% | −0.318 | +0.073 | |||||
| ND6NADH dehydrogenase subunit 6 | 494 bp | 33.60% | −0.446 | +0.457 | |||||
| CYTBCytochrome b | 1,138 bp | 33.57% | −0.351 | +0.024 | |||||
| 12S rRNA12S ribosomal RNA | 943 bp | 35.53% | −0.188 | +0.171 | |||||
| 16S rRNA16S ribosomal RNA | 1,576 bp | 32.23% | −0.122 | +0.230 | |||||
| D-loopControl region (D-loop) | 630 bp | 29.37% | −0.308 | −0.061 |
Codon usage
Counts per codon, darker is more frequent3,762 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU167
UUC64
Leu L14.7%
UUA315
UUG16
CUU66
CUC24
CUA127
CUG4
Ile I9.3%
AUU252
AUC97
Met M7.9%
AUA278
AUG20
Val V4.1%
GUU54
GUC7
GUA89
GUG3
Ser S7.0%
UCU46
UCC27
UCA146
UCG4
AGU20
AGC22
Pro P5.2%
CCU27
CCC11
CCA152
CCG4
Thr T9.2%
ACU84
ACC77
ACA182
ACG2
Ala A6.1%
GCU66
GCC64
GCA97
GCG3
Tyr Y3.2%
UAU95
UAC27
His H2.4%
CAU51
CAC39
Gln Q2.8%
CAA105
CAG2
Asn N4.2%
AAU82
AAC75
Lys K2.4%
AAA89
AAG1
Asp D1.6%
GAU46
GAC16
Glu E2.5%
GAA88
GAG5
Cys C0.7%
UGU18
UGC8
Trp W3.0%
UGA102
UGG9
Arg R1.8%
CGU13
CGC6
CGA46
CGG2
Gly G5.7%
GGU74
GGC30
GGA98
GGG12
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_020138.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (31.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 71 | 71 bp | + | – |
| 12S rRNA | Ribosomal RNA | 225 | 1,167 | 943 bp | + | 35.5% |
| tRNA-Val | Transfer RNA | 1,168 | 1,236 | 69 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,237 | 2,812 | 1,576 bp | + | 32.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,813 | 2,882 | 70 bp | + | – |
| ND1 | Protein-coding gene | 2,884 | 3,846 | 963 bp | + | 30.7% |
| tRNA-Ile | Transfer RNA | 3,847 | 3,917 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,918 | 3,988 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,988 | 4,056 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,060 | 5,095 | 1,036 bp | + | 29.7% |
| tRNA-Trp | Transfer RNA | 5,096 | 5,165 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,172 | 5,240 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,241 | 5,313 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,346 | 5,410 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,480 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,035 | 1,554 bp | + | 34.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,024 | 7,096 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,097 | 7,165 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,168 | 7,856 | 689 bp | + | 33.2% |
| tRNA-Lys | Transfer RNA | 7,857 | 7,927 | 71 bp | + | – |
| ATP8 | Protein-coding gene | 7,930 | 8,094 | 165 bp | + | 24.9% |
| ATP6 | Protein-coding gene | 8,085 | 8,768 | 684 bp | + | 30.3% |
| COX3 | Protein-coding gene | 8,768 | 9,551 | 784 bp | + | 35.0% |
| tRNA-Gly | Transfer RNA | 9,552 | 9,620 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,621 | 9,964 | 344 bp | + | 33.1% |
| tRNA-Arg | Transfer RNA | 9,965 | 10,032 | 68 bp | + | – |
| ND4L | Protein-coding gene | 10,033 | 10,323 | 291 bp | + | 35.1% |
| ND4 | Protein-coding gene | 10,323 | 11,694 | 1,372 bp | + | 30.0% |
| tRNA-His | Transfer RNA | 11,695 | 11,765 | 71 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,766 | 11,832 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,829 | 11,901 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,903 | 13,684 | 1,782 bp | + | 28.5% |
| ND6 | Protein-coding gene | 13,682 | 14,175 | 494 bp | − | 33.6% |
| tRNA-Glu | Transfer RNA | 14,175 | 14,245 | 71 bp | − | – |
| CYTB | Protein-coding gene | 14,249 | 15,386 | 1,138 bp | + | 33.6% |
| tRNA-Thr | Transfer RNA | 15,387 | 15,455 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,463 | 15,532 | 70 bp | − | – |
| D-loop | Control region | 15,533 | 16,162 | 630 bp | – | 29.4% |