MitoAge

Elaphurus davidianus

Pere David's deer

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Maximum lifespan
27.5 yr
AnAge record
mtDNA size
16,355 bp
RefSeq NC_018358.1
GC content
37.97%
Whole genome
Non-coding
980 bp
D-loop 921 bp

Where Pere David's deer sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pere David's deer has the 532nd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Pere David's deer
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,355 bp
GC skew (G − C) / (G + C)
−0.295
AT skew (A − T) / (A + T)
+0.075

Life history

Maximum lifespan
27.5 years
Adult weight
186.5 kg
Birth weight
11 kg
Female sexual maturity
2.2 years
Male sexual maturity
3.2 years
Gestation or incubation
288 days
Litter or clutch size
1
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02024)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,355 bp
Protein-coding11,338 bp
12S rRNA955 bp
16S rRNA1,570 bp
All tRNA1,515 bp
D-loop921 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.5%29.9%12.0%26.6%38.60%−0.377+0.026
ND2NADH dehydrogenase subunit 21,042 bp36.5%28.5%9.0%26.0%35.03%−0.485+0.123
COX1Cytochrome c oxidase subunit I1,545 bp28.8%31.8%16.2%23.2%39.42%−0.179−0.049
COX2Cytochrome c oxidase subunit II684 bp34.8%28.2%13.9%23.1%36.99%−0.249+0.104
ATP8ATP synthase F0 subunit 8201 bp40.8%30.8%6.5%21.9%28.36%−0.544+0.139
ATP6ATP synthase F0 subunit 6681 bp30.7%31.0%12.0%26.3%38.33%−0.372−0.005
COX3Cytochrome c oxidase subunit III784 bp27.8%30.7%14.0%27.4%41.45%−0.323−0.050
ND3NADH dehydrogenase subunit 3346 bp29.8%29.8%13.0%27.5%40.46%−0.3570.000
ND4LNADH dehydrogenase subunit 4L297 bp31.3%32.7%12.8%23.2%36.03%−0.290−0.021
ND4NADH dehydrogenase subunit 41,378 bp32.1%30.2%10.7%27.0%37.74%−0.431+0.030
ND5NADH dehydrogenase subunit 51,821 bp33.4%29.9%10.5%26.2%36.74%−0.429+0.056
ND6NADH dehydrogenase subunit 6528 bp40.9%22.9%8.0%28.2%36.17%−0.560+0.282
CYTBCytochrome b1,140 bp31.0%28.0%13.2%27.9%41.05%−0.359+0.051
12S rRNA12S ribosomal RNA955 bp36.4%22.6%18.1%22.8%40.94%−0.115+0.234
16S rRNA16S ribosomal RNA1,570 bp37.9%25.2%17.3%19.6%36.94%−0.062+0.202
D-loopControl region (D-loop)921 bp30.4%31.3%14.0%24.3%38.33%−0.269−0.014

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.6%
UUU132
UUC117
Leu L15.6%
UUA139
UUG11
CUU81
CUC87
CUA246
CUG27
Ile I8.7%
AUU199
AUC131
Met M6.9%
AUA215
AUG49
Val V5.0%
GUU53
GUC46
GUA73
GUG19
Ser S7.3%
UCU52
UCC65
UCA96
UCG7
AGU22
AGC35
Pro P5.1%
CCU45
CCC56
CCA87
CCG4
Thr T8.1%
ACU61
ACC71
ACA165
ACG11
Ala A6.3%
GCU51
GCC78
GCA106
GCG6
Tyr Y3.4%
UAU80
UAC49
His H2.4%
CAU33
CAC60
Gln Q2.4%
CAA85
CAG8
Asn N4.4%
AAU78
AAC89
Lys K2.5%
AAA89
AAG6
Asp D1.8%
GAU26
GAC41
Glu E2.6%
GAA79
GAG18
Cys C0.6%
UGU5
UGC18
Trp W2.7%
UGA92
UGG12
Arg R1.7%
CGU8
CGC13
CGA38
CGG4
Gly G5.7%
GGU38
GGC55
GGA104
GGG20
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_018358.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,024955 bp+40.9%
tRNA-ValTransfer RNA1,0251,09167 bp+–
16S rRNARibosomal RNA1,0922,6611,570 bp+36.9%
tRNA-Leu (UUR)Transfer RNA2,6622,73675 bp+–
ND1Protein-coding gene2,7393,694956 bp+38.6%
tRNA-IleTransfer RNA3,6953,76369 bp+–
tRNA-GlnTransfer RNA3,7613,83272 bp−–
tRNA-MetTransfer RNA3,8353,90369 bp+–
ND2Protein-coding gene3,9044,9451,042 bp+35.0%
tRNA-TrpTransfer RNA4,9465,01368 bp+–
tRNA-AlaTransfer RNA5,0175,08468 bp−–
tRNA-AsnTransfer RNA5,0865,15873 bp−–
tRNA-CysTransfer RNA5,1915,25868 bp−–
tRNA-TyrTransfer RNA5,2595,32567 bp−–
COX1Protein-coding gene5,3296,8731,545 bp+39.4%
tRNA-Ser (UCN)Transfer RNA6,8716,94171 bp−–
tRNA-AspTransfer RNA6,9477,01468 bp+–
COX2Protein-coding gene7,0167,699684 bp+37.0%
tRNA-LysTransfer RNA7,7037,77068 bp+–
ATP8Protein-coding gene7,7727,972201 bp+28.4%
ATP6Protein-coding gene7,9338,613681 bp+38.3%
COX3Protein-coding gene8,6139,396784 bp+41.5%
tRNA-GlyTransfer RNA9,3979,46569 bp+–
ND3Protein-coding gene9,4669,811346 bp+40.5%
tRNA-ArgTransfer RNA9,8139,88169 bp+–
ND4LProtein-coding gene9,88210,178297 bp+36.0%
ND4Protein-coding gene10,17211,5491,378 bp+37.7%
tRNA-HisTransfer RNA11,55011,61869 bp+–
tRNA-Ser (AGY)Transfer RNA11,61911,67860 bp+–
tRNA-Leu (CUN)Transfer RNA11,68011,74970 bp+–
ND5Protein-coding gene11,75013,5701,821 bp+36.7%
ND6Protein-coding gene13,55414,081528 bp−36.2%
tRNA-GluTransfer RNA14,08214,15271 bp−–
CYTBProtein-coding gene14,15515,2941,140 bp+41.1%
tRNA-ThrTransfer RNA15,29715,36872 bp+–
tRNA-ProTransfer RNA15,36715,43468 bp−–
D-loopControl region15,43516,355921 bp–38.3%

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