Emberiza schoeniclus
Reed bunting
GC content
47.66%
Whole genome
Non-coding
1,290 bp
D-loop 1,197 bp
Where Reed bunting sits among 2,335 species
Whole-genome GC content against maximum lifespan. Reed bunting has the 1,399th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,779 bp
- GC skew (G − C) / (G + C)
- −0.393
- AT skew (A − T) / (A + T)
- +0.133
Life history
- Maximum lifespan
- 12.2 years
- Adult weight
- 18.4 g
- Basal metabolic rate
- 0.3 W
- Female sexual maturity
- 365 days
- Male sexual maturity
- 365 days
Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 00866)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,779 bp
Protein-coding11,378 bp
12S rRNA978 bp
16S rRNA1,603 bp
All tRNA1,541 bp
D-loop1,197 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 49.28% | −0.361 | −0.020 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 47.31% | −0.549 | +0.120 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.74% | −0.320 | +0.077 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 51.46% | −0.375 | +0.169 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.21% | −0.679 | +0.080 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.78% | −0.556 | +0.115 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 50.89% | −0.378 | +0.081 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 47.29% | −0.482 | +0.016 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.85% | −0.468 | +0.049 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 48.33% | −0.547 | +0.146 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 47.14% | −0.503 | +0.149 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 51.06% | −0.638 | +0.598 | |||||
| CYTBCytochrome b | 1,143 bp | 51.27% | −0.464 | +0.048 | |||||
| 12S rRNA12S ribosomal RNA | 978 bp | 49.69% | −0.144 | +0.211 | |||||
| 16S rRNA16S ribosomal RNA | 1,603 bp | 44.67% | −0.137 | +0.256 | |||||
| D-loopControl region (D-loop) | 1,197 bp | 44.03% | −0.419 | +0.036 |
Codon usage
Counts per codon, darker is more frequent3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU37
UUC183
Leu L17.7%
UUA56
UUG18
CUU41
CUC206
CUA289
CUG63
Ile I7.7%
AUU55
AUC238
Met M4.1%
AUA111
AUG43
Val V5.1%
GUU37
GUC60
GUA70
GUG26
Ser S7.6%
UCU34
UCC104
UCA86
UCG4
AGU6
AGC54
Pro P5.8%
CCU34
CCC90
CCA94
CCG4
Thr T8.3%
ACU32
ACC148
ACA122
ACG12
Ala A8.4%
GCU38
GCC177
GCA89
GCG14
Tyr Y2.9%
UAU18
UAC94
His H2.7%
CAU12
CAC90
Gln Q2.4%
CAA79
CAG13
Asn N3.5%
AAU13
AAC120
Lys K2.2%
AAA78
AAG7
Asp D1.7%
GAU8
GAC58
Glu E2.3%
GAA64
GAG25
Cys C0.8%
UGU5
UGC27
Trp W2.8%
UGA96
UGG10
Arg R1.9%
CGU5
CGC23
CGA41
CGG5
Gly G5.8%
GGU27
GGC71
GGA90
GGG33
Stop 0.3%
UAA6
UAG1
AGA2
AGG1
Genome map
38 annotated features in NC_062087.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,046 | 978 bp | + | 49.7% |
| tRNA-Val | Transfer RNA | 1,046 | 1,115 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,116 | 2,718 | 1,603 bp | + | 44.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,718 | 2,792 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,808 | 3,785 | 978 bp | + | 49.3% |
| tRNA-Ile | Transfer RNA | 3,793 | 3,864 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,870 | 3,940 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,940 | 4,008 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,009 | 5,048 | 1,040 bp | + | 47.3% |
| tRNA-Trp | Transfer RNA | 5,049 | 5,118 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,120 | 5,188 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,197 | 5,269 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,270 | 5,336 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,336 | 5,406 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,408 | 6,958 | 1,551 bp | + | 48.7% |
| tRNA-Ser (UCN) | Transfer RNA | 6,950 | 7,022 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,026 | 7,094 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,103 | 7,786 | 684 bp | + | 51.5% |
| tRNA-Lys | Transfer RNA | 7,788 | 7,856 | 69 bp | + | – |
| ATP8 | Protein-coding gene | 7,858 | 8,025 | 168 bp | + | 48.2% |
| ATP6 | Protein-coding gene | 8,016 | 8,699 | 684 bp | + | 46.8% |
| COX3 | Protein-coding gene | 8,705 | 9,488 | 784 bp | + | 50.9% |
| tRNA-Gly | Transfer RNA | 9,489 | 9,557 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,558 | 9,908 | 351 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 9,910 | 9,979 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,981 | 10,277 | 297 bp | + | 51.9% |
| ND4 | Protein-coding gene | 10,271 | 11,648 | 1,378 bp | + | 48.3% |
| tRNA-His | Transfer RNA | 11,649 | 11,718 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,719 | 11,784 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,784 | 11,854 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,855 | 13,672 | 1,818 bp | + | 47.1% |
| CYTB | Protein-coding gene | 13,681 | 14,823 | 1,143 bp | + | 51.3% |
| tRNA-Thr | Transfer RNA | 14,827 | 14,895 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,911 | 14,981 | 71 bp | − | – |
| ND6 | Protein-coding gene | 14,991 | 15,509 | 519 bp | − | 51.1% |
| tRNA-Glu | Transfer RNA | 15,511 | 15,582 | 72 bp | − | – |
| D-loop | Control region | 15,583 | 16,779 | 1,197 bp | – | 44.0% |