Ficedula albicollis
Collared flycatcher
GC content
48.35%
Whole genome
Non-coding
1,297 bp
Including the D-loop
Where Collared flycatcher sits among 2,335 species
Whole-genome GC content against maximum lifespan. Collared flycatcher has the 1,620th longest lifespan of them.
- This species
- Other birds
- Other classes
Base composition
Whole genome16,787 bp
- GC skew (G − C) / (G + C)
- −0.369
- AT skew (A − T) / (A + T)
- +0.125
Life history
- Maximum lifespan
- 9.8 years
- Adult weight
- 12.7 g
- Female sexual maturity
- 365 days
- Male sexual maturity
- 365 days
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01065)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,787 bp
Protein-coding11,387 bp
12S rRNA983 bp
16S rRNA1,596 bp
All tRNA1,543 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 978 bp | 51.84% | −0.396 | +0.053 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 48.75% | −0.495 | +0.129 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 50.06% | −0.314 | +0.073 | |||||
| COX2Cytochrome c oxidase subunit II | 684 bp | 49.85% | −0.349 | +0.085 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.746 | +0.113 | |||||
| ATP6ATP synthase F0 subunit 6 | 693 bp | 50.79% | −0.540 | +0.114 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 51.91% | −0.400 | +0.066 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 49.00% | −0.349 | +0.050 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.18% | −0.434 | +0.048 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 49.57% | −0.514 | +0.142 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,818 bp | 48.46% | −0.489 | +0.136 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 52.41% | −0.537 | +0.571 | |||||
| CYTBCytochrome b | 1,143 bp | 49.17% | −0.420 | +0.074 | |||||
| 12S rRNA12S ribosomal RNA | 983 bp | 49.14% | −0.143 | +0.192 | |||||
| 16S rRNA16S ribosomal RNA | 1,596 bp | 45.18% | −0.115 | +0.237 |
Codon usage
Counts per codon, darker is more frequent3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.7%
UUU33
UUC184
Leu L17.5%
UUA26
UUG10
CUU42
CUC193
CUA317
CUG77
Ile I7.7%
AUU59
AUC234
Met M4.1%
AUA98
AUG57
Val V5.2%
GUU25
GUC69
GUA69
GUG33
Ser S7.4%
UCU35
UCC96
UCA84
UCG8
AGU3
AGC54
Pro P6.0%
CCU31
CCC92
CCA98
CCG6
Thr T7.9%
ACU32
ACC151
ACA111
ACG8
Ala A8.8%
GCU35
GCC186
GCA108
GCG7
Tyr Y3.0%
UAU15
UAC98
His H2.7%
CAU15
CAC87
Gln Q2.6%
CAA84
CAG16
Asn N3.4%
AAU20
AAC109
Lys K2.2%
AAA79
AAG6
Asp D1.8%
GAU12
GAC55
Glu E2.3%
GAA61
GAG28
Cys C0.9%
UGU6
UGC29
Trp W2.8%
UGA101
UGG6
Arg R1.8%
CGU7
CGC21
CGA35
CGG7
Gly G5.9%
GGU26
GGC80
GGA68
GGG51
Stop 0.3%
UAA4
UAG3
AGA2
AGG1
Genome map
37 annotated features in NC_021621.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 68 | 1,050 | 983 bp | + | 49.1% |
| tRNA-Val | Transfer RNA | 1,050 | 1,119 | 70 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,120 | 2,715 | 1,596 bp | + | 45.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,718 | 2,792 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,798 | 3,775 | 978 bp | + | 51.8% |
| tRNA-Ile | Transfer RNA | 3,781 | 3,852 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,859 | 3,929 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,929 | 3,997 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,998 | 5,037 | 1,040 bp | + | 48.8% |
| tRNA-Trp | Transfer RNA | 5,038 | 5,108 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,110 | 5,178 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,183 | 5,255 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,256 | 5,322 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,323 | 5,392 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,385 | 6,944 | 1,560 bp | + | 50.1% |
| tRNA-Ser (UCN) | Transfer RNA | 6,936 | 7,010 | 75 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,014 | 7,082 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,092 | 7,775 | 684 bp | + | 49.9% |
| tRNA-Lys | Transfer RNA | 7,777 | 7,844 | 68 bp | + | – |
| ATP8 | Protein-coding gene | 7,846 | 8,013 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 7,995 | 8,687 | 693 bp | + | 50.8% |
| COX3 | Protein-coding gene | 8,692 | 9,475 | 784 bp | + | 51.9% |
| tRNA-Gly | Transfer RNA | 9,476 | 9,544 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,545 | 9,895 | 351 bp | + | 49.0% |
| tRNA-Arg | Transfer RNA | 9,897 | 9,966 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,968 | 10,264 | 297 bp | + | 51.2% |
| ND4 | Protein-coding gene | 10,258 | 11,635 | 1,378 bp | + | 49.6% |
| tRNA-His | Transfer RNA | 11,636 | 11,706 | 71 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,707 | 11,772 | 66 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,772 | 11,842 | 71 bp | + | – |
| ND5 | Protein-coding gene | 11,843 | 13,660 | 1,818 bp | + | 48.5% |
| CYTB | Protein-coding gene | 13,669 | 14,811 | 1,143 bp | + | 49.2% |
| tRNA-Thr | Transfer RNA | 14,815 | 14,883 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 14,892 | 14,961 | 70 bp | − | – |
| ND6 | Protein-coding gene | 14,969 | 15,487 | 519 bp | − | 52.4% |
| tRNA-Glu | Transfer RNA | 15,489 | 15,560 | 72 bp | − | – |