MitoAge

Fringilla coelebs

Chaffinch

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Maximum lifespan
29 yr
AnAge record
mtDNA size
16,801 bp
RefSeq NC_025599.1
GC content
46.12%
Whole genome
Non-coding
1,320 bp
D-loop 1,235 bp

Where Chaffinch sits among 2,335 species

Whole-genome GC content against maximum lifespan. Chaffinch has the 485th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Chaffinch
  • This species
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,801 bp
GC skew (G − C) / (G + C)
−0.384
AT skew (A − T) / (A + T)
+0.132

Life history

Maximum lifespan
29 years
Adult weight
20.7 g
Basal metabolic rate
0.373 W
Female sexual maturity
365 days
Male sexual maturity
365 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00892)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,801 bp
Protein-coding11,378 bp
12S rRNA973 bp
16S rRNA1,599 bp
All tRNA1,540 bp
D-loop1,235 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp26.9%24.6%14.3%34.2%48.47%−0.409+0.044
ND2NADH dehydrogenase subunit 21,040 bp30.3%24.6%10.3%34.8%45.10%−0.544+0.103
COX1Cytochrome c oxidase subunit I1,551 bp28.0%24.7%16.6%30.7%47.32%−0.297+0.062
COX2Cytochrome c oxidase subunit II684 bp28.9%22.8%15.6%32.6%48.25%−0.352+0.119
ATP8ATP synthase F0 subunit 8168 bp31.5%25.0%7.7%35.7%43.45%−0.644+0.116
ATP6ATP synthase F0 subunit 6684 bp30.0%22.8%9.5%37.7%47.22%−0.598+0.136
COX3Cytochrome c oxidase subunit III784 bp26.7%23.9%15.6%33.9%49.49%−0.371+0.056
ND3NADH dehydrogenase subunit 3351 bp29.1%24.5%10.5%35.9%46.44%−0.546+0.085
ND4LNADH dehydrogenase subunit 4L297 bp28.3%23.2%11.8%36.7%48.49%−0.514+0.098
ND4NADH dehydrogenase subunit 41,378 bp30.8%22.8%11.0%35.4%46.41%−0.527+0.149
ND5NADH dehydrogenase subunit 51,818 bp31.2%22.9%11.2%34.7%45.88%−0.511+0.154
ND6NADH dehydrogenase subunit 6519 bp39.1%11.9%10.0%38.9%48.94%−0.591+0.532
CYTBCytochrome b1,143 bp28.7%23.7%12.9%34.6%47.50%−0.458+0.095
12S rRNA12S ribosomal RNA973 bp30.3%20.9%21.5%27.3%48.82%−0.120+0.185
16S rRNA16S ribosomal RNA1,599 bp34.1%21.1%20.0%24.7%44.72%−0.105+0.235
D-loopControl region (D-loop)1,235 bp29.2%28.6%12.7%29.5%42.19%−0.397+0.011

Codon usage

Counts per codon, darker is more frequent

3,794 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU39
UUC180
Leu L17.5%
UUA54
UUG13
CUU57
CUC148
CUA348
CUG43
Ile I7.7%
AUU59
AUC235
Met M4.4%
AUA128
AUG39
Val V5.3%
GUU43
GUC57
GUA79
GUG21
Ser S7.6%
UCU33
UCC108
UCA79
UCG10
AGU4
AGC53
Pro P5.9%
CCU36
CCC90
CCA95
CCG4
Thr T8.1%
ACU46
ACC140
ACA117
ACG5
Ala A8.1%
GCU41
GCC161
GCA94
GCG11
Tyr Y2.9%
UAU23
UAC88
His H2.7%
CAU19
CAC85
Gln Q2.5%
CAA85
CAG8
Asn N3.5%
AAU18
AAC116
Lys K2.2%
AAA78
AAG7
Asp D1.8%
GAU13
GAC56
Glu E2.4%
GAA80
GAG10
Cys C0.8%
UGU4
UGC25
Trp W2.8%
UGA104
UGG2
Arg R1.9%
CGU6
CGC16
CGA44
CGG7
Gly G5.8%
GGU23
GGC58
GGA109
GGG30
Stop 0.3%
UAA6
UAG1
AGA2
AGG1

Genome map

38 annotated features in NC_025599.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,2351,235 bp–42.2%
tRNA-PheTransfer RNA1,2361,30368 bp+–
12S rRNARibosomal RNA1,3042,276973 bp+48.8%
tRNA-ValTransfer RNA2,2772,34670 bp+–
16S rRNARibosomal RNA2,3473,9451,599 bp+44.7%
tRNA-Leu (UUR)Transfer RNA3,9464,02075 bp+–
ND1Protein-coding gene4,0365,013978 bp+48.5%
tRNA-IleTransfer RNA5,0195,09274 bp+–
tRNA-GlnTransfer RNA5,0965,16671 bp−–
tRNA-MetTransfer RNA5,1665,23469 bp+–
ND2Protein-coding gene5,2356,2741,040 bp+45.1%
tRNA-TrpTransfer RNA6,2756,34571 bp+–
tRNA-AlaTransfer RNA6,3476,41569 bp−–
tRNA-AsnTransfer RNA6,4236,49573 bp−–
tRNA-CysTransfer RNA6,4966,56267 bp−–
tRNA-TyrTransfer RNA6,5626,63271 bp−–
COX1Protein-coding gene6,6348,1841,551 bp+47.3%
tRNA-Ser (UCN)Transfer RNA8,1768,24873 bp−–
tRNA-AspTransfer RNA8,2548,32269 bp+–
COX2Protein-coding gene8,3319,014684 bp+48.3%
tRNA-LysTransfer RNA9,0169,08267 bp+–
ATP8Protein-coding gene9,0849,251168 bp+43.5%
ATP6Protein-coding gene9,2429,925684 bp+47.2%
COX3Protein-coding gene9,93210,715784 bp+49.5%
tRNA-GlyTransfer RNA10,71610,78469 bp+–
ND3Protein-coding gene10,78511,135351 bp+46.4%
tRNA-ArgTransfer RNA11,13711,20670 bp+–
ND4LProtein-coding gene11,20811,504297 bp+48.5%
ND4Protein-coding gene11,49812,8751,378 bp+46.4%
tRNA-HisTransfer RNA12,87612,94570 bp+–
tRNA-Ser (AGY)Transfer RNA12,94613,01166 bp+–
tRNA-Leu (CUN)Transfer RNA13,01113,08171 bp+–
ND5Protein-coding gene13,08214,8991,818 bp+45.9%
CYTBProtein-coding gene14,90816,0501,143 bp+47.5%
tRNA-ThrTransfer RNA16,05416,12269 bp+–
tRNA-ProTransfer RNA16,12916,19870 bp−–
ND6Protein-coding gene16,21116,729519 bp−48.9%
tRNA-GluTransfer RNA16,73116,80171 bp−–

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