MitoAge

Haemorhous cassinii

Cassin's finch

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Maximum lifespan
7 yr
AnAge record
mtDNA size
16,812 bp
RefSeq NC_025613.1
GC content
44.76%
Whole genome
Non-coding
1,329 bp
D-loop 1,227 bp

Where Cassin's finch sits among 2,335 species

Whole-genome GC content against maximum lifespan. Cassin's finch has the 1,861st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Cassin's finch
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,812 bp
GC skew (G − C) / (G + C)
−0.363
AT skew (A − T) / (A + T)
+0.120

Life history

Maximum lifespan
7 years
Adult weight
27.5 g
Basal metabolic rate
0.339 W
Female sexual maturity
365 days
Male sexual maturity
365 days
Gestation or incubation
13 days
Litter or clutch size
4
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 00894)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,812 bp
Protein-coding11,378 bp
12S rRNA974 bp
16S rRNA1,599 bp
All tRNA1,541 bp
D-loop1,227 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1978 bp27.3%27.7%14.6%30.4%44.99%−0.350−0.007
ND2NADH dehydrogenase subunit 21,040 bp30.7%26.0%10.1%33.3%43.37%−0.534+0.083
COX1Cytochrome c oxidase subunit I1,551 bp28.3%25.1%17.0%29.7%46.62%−0.272+0.060
COX2Cytochrome c oxidase subunit II684 bp31.0%24.1%14.2%30.7%44.88%−0.368+0.125
ATP8ATP synthase F0 subunit 8168 bp29.2%26.8%8.3%35.7%44.05%−0.622+0.043
ATP6ATP synthase F0 subunit 6684 bp30.1%25.4%10.7%33.8%44.44%−0.520+0.084
COX3Cytochrome c oxidase subunit III784 bp28.7%24.6%14.9%31.8%46.68%−0.361+0.077
ND3NADH dehydrogenase subunit 3351 bp27.9%26.8%13.1%32.2%45.30%−0.421+0.021
ND4LNADH dehydrogenase subunit 4L297 bp28.3%24.6%12.1%35.0%47.14%−0.486+0.070
ND4NADH dehydrogenase subunit 41,378 bp30.7%23.1%10.7%35.6%46.23%−0.538+0.142
ND5NADH dehydrogenase subunit 51,818 bp31.5%24.1%12.0%32.5%44.44%−0.460+0.133
ND6NADH dehydrogenase subunit 6519 bp40.8%11.4%8.7%38.9%47.68%−0.636+0.565
CYTBCytochrome b1,143 bp29.7%24.2%13.2%32.9%46.11%−0.427+0.101
12S rRNA12S ribosomal RNA974 bp30.9%21.6%20.7%26.8%47.54%−0.127+0.178
16S rRNA16S ribosomal RNA1,599 bp34.8%21.7%19.4%24.0%43.47%−0.105+0.232
D-loopControl region (D-loop)1,227 bp29.7%28.7%13.3%28.4%41.65%−0.362+0.017

Codon usage

Counts per codon, darker is more frequent

3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU52
UUC170
Leu L17.4%
UUA71
UUG21
CUU77
CUC124
CUA327
CUG39
Ile I7.8%
AUU94
AUC201
Met M4.4%
AUA131
AUG37
Val V5.3%
GUU40
GUC52
GUA86
GUG23
Ser S7.7%
UCU45
UCC79
UCA101
UCG10
AGU8
AGC48
Pro P5.7%
CCU43
CCC61
CCA106
CCG7
Thr T8.0%
ACU45
ACC136
ACA118
ACG5
Ala A8.3%
GCU52
GCC146
GCA106
GCG11
Tyr Y2.9%
UAU20
UAC90
His H2.7%
CAU19
CAC83
Gln Q2.5%
CAA85
CAG9
Asn N3.6%
AAU24
AAC112
Lys K2.3%
AAA80
AAG8
Asp D1.7%
GAU11
GAC53
Glu E2.5%
GAA80
GAG14
Cys C0.7%
UGU9
UGC18
Trp W2.8%
UGA102
UGG4
Arg R1.9%
CGU5
CGC16
CGA48
CGG3
Gly G5.8%
GGU27
GGC59
GGA97
GGG38
Stop 0.3%
UAA6
UAG1
AGA2
AGG1

Genome map

38 annotated features in NC_025613.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (44.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,2271,227 bp–41.7%
tRNA-PheTransfer RNA1,2281,29568 bp+–
12S rRNARibosomal RNA1,2962,269974 bp+47.5%
tRNA-ValTransfer RNA2,2702,33970 bp+–
16S rRNARibosomal RNA2,3403,9381,599 bp+43.5%
tRNA-Leu (UUR)Transfer RNA3,9394,01375 bp+–
ND1Protein-coding gene4,0285,005978 bp+45.0%
tRNA-IleTransfer RNA5,0115,08474 bp+–
tRNA-GlnTransfer RNA5,0885,15871 bp−–
tRNA-MetTransfer RNA5,1585,22669 bp+–
ND2Protein-coding gene5,2276,2661,040 bp+43.4%
tRNA-TrpTransfer RNA6,2676,33670 bp+–
tRNA-AlaTransfer RNA6,3386,40669 bp−–
tRNA-AsnTransfer RNA6,4156,48773 bp−–
tRNA-CysTransfer RNA6,4886,55467 bp−–
tRNA-TyrTransfer RNA6,5546,62471 bp−–
COX1Protein-coding gene6,6268,1761,551 bp+46.6%
tRNA-Ser (UCN)Transfer RNA8,1688,24073 bp−–
tRNA-AspTransfer RNA8,2468,31469 bp+–
COX2Protein-coding gene8,3259,008684 bp+44.9%
tRNA-LysTransfer RNA9,0109,07869 bp+–
ATP8Protein-coding gene9,0809,247168 bp+44.1%
ATP6Protein-coding gene9,2389,921684 bp+44.4%
COX3Protein-coding gene9,93010,713784 bp+46.7%
tRNA-GlyTransfer RNA10,71410,78269 bp+–
ND3Protein-coding gene10,78311,133351 bp+45.3%
tRNA-ArgTransfer RNA11,13511,20470 bp+–
ND4LProtein-coding gene11,20611,502297 bp+47.1%
ND4Protein-coding gene11,49612,8731,378 bp+46.2%
tRNA-HisTransfer RNA12,87412,94370 bp+–
tRNA-Ser (AGY)Transfer RNA12,94413,00966 bp+–
tRNA-Leu (CUN)Transfer RNA13,00913,07971 bp+–
ND5Protein-coding gene13,08014,8971,818 bp+44.4%
CYTBProtein-coding gene14,90616,0481,143 bp+46.1%
tRNA-ThrTransfer RNA16,05216,12069 bp+–
tRNA-ProTransfer RNA16,14216,21170 bp−–
ND6Protein-coding gene16,22216,740519 bp−47.7%
tRNA-GluTransfer RNA16,74216,81271 bp−–

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